Scaffold Ga0335037_0008168

Overview

Basic Information

• Taxon OID: 3300034107
• Scaffold ID: Ga0335037_0008168
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5570
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001731	Metagenome	644	Y
F005503	Metagenome / Metatranscriptome	398	Y
F097225	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335037_0008168_1667_2914	F001731	AGG	MTVFNPVWRVTIAGVEYQTAILSNLTITSGRTNIYEQAQAGYTNIELINLDQSNVIIGINDSLTIELQDSTATFIPIFGGSIVDVAISVAELGNVAYAQRVKIIALGALARLPKALTDGTLVQDFDGDQILHILQDLLLNNWGEVPAALQWNTYDPTETWANAQNTGLGEIDTPGNYELAQRASSRTDIYSLVAALATSGLGYIYENAQGQISYADSTHRSIYLATNGYVNLSANDAQGAGLTIQQRAGDVRNTITLKYGTNSTSEVDATDTTSVGLYGQLAQIFTTTVKHMADAQDQADFYLTLRAYPQYNFNQITYQLTNPEIDDADRDSLINVFMGMPLAIADMPLNMSAGTYLGFVEGWTFQAAYNEISVSLNLSPLSYSLQAMQWQDVSVAEAWNTISGILDWEHALVVA
Ga0335037_0008168_4302_4454	F097225	GGAG	MENVTFVTIDEVEHAIIDRGNGEFTSMLRSTYETQQATLSTPMVTDAPKS
Ga0335037_0008168_5381_5539	F005503	GGAG	MTTSEVGLFVIMAIACILWSICSYSVGYKEGHKDGYQRGKAVGRHASSQAVR