NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335037_0004666

Scaffold Ga0335037_0004666


Overview

Basic Information
Taxon OID3300034107 Open in IMG/M
Scaffold IDGa0335037_0004666 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7226
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004133Metagenome / Metatranscriptome451Y
F035768Metagenome / Metatranscriptome171Y
F062765Metagenome / Metatranscriptome130Y
F073553Metagenome / Metatranscriptome120Y
F081346Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0335037_0004666_1_162F081346N/AAKPDPNKPITHINPPTVVPDRVMPLKPGALETVVVPETEANPDKPKKPKKPRK
Ga0335037_0004666_246_437F035768AGGAMKITIEDRLLANYHAQMMRLRDREDEDYRAKVEDRAFEKIIAERVRRNLRLDLDKGTNIDIEV
Ga0335037_0004666_3189_3542F004133GGAMKYTKEITDKLILDYKSGVSVAEIATTLDVPERSVIAKLSSLGVYLKKSYVNKRGEVPVKKSEHIERIAELLDVDEELLESLEKVNKTVLKLIENKLAESDPKLHQTRQTDHLFAEA
Ga0335037_0004666_5239_5373F073553GGAMTEQEFYAQIQEDYFREFAGTELSEIFICTNTHDEFFEFDDVPF
Ga0335037_0004666_632_955F062765GGAMGWYRTRGLTQKQTKIADTNTMFTTEGEPYTSETITTHYSCGRIDVHNVPSEPYGDEINVPPMLSTDWALFGNWLDTVKTMSVWTLADLVTAYEQHNPKITWDTYDG
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