Scaffold Ga0335036_0055282

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0055282
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3020
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F028148	Metagenome	192	Y
F090064	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0055282_1428_1565	F090064	AGGA	VKVYWTAFYGRSEYTFQGRNAKRDAHRLVKRFGGRVVREIIKSNE
Ga0335036_0055282_1979_2224	F002227	N/A	MKLTIQSKTNAQTIVDLFNAIITGECETQGVKPLSIYDEDKHICSIVAANGEQILELIIEREQGDKLCPAFEGNPDDEKLL
Ga0335036_0055282_2475_2732	F001964	GGAGG	MSRNLFAPPRFKVQISGAIGWSDLKERVVRFETLEFRARKEAETTARELNPGEYTQGRIRVVPVEVLEDYDVYPTAERTKANHSQ
Ga0335036_0055282_587_1186	F028148	N/A	MKTIHQIIHEIQFFDPAVRAFDAHDLPQSVRAYLHHNYRMDARLTDDEQQLIETSFEHFADNLRESFQDDPRPDATRFYLFDDLSLYVRTNAGPELWADAQVFVVERILPAMRLTRLEADLMREIGMDDQVSEVREDFYSSFAHILHRDCGIPHCDAREHWNAWSNQLSDSACESIVLGGGESGRAEGIRFASEYSVNA