Scaffold Ga0335036_0020970

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0020970
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5247
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025458	Metagenome / Metatranscriptome	201	Y
F045612	Metagenome	152	Y
F088510	Metagenome	109	Y
F104721	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0020970_1737_2126	F104721	N/A	MSQEKILFTKNLKLASVLATLGIPFRKERPFSVVEDADKNNQRSVTFFFSDTADGLGGKIVNVWERGWEAIKDPEEPLAYMRAVLENRERLLDAMNNATPLVKKSFGKATLLISKNASPDLKKRISKYL
Ga0335036_0020970_283_606	F025458	GAGG	MSLKQEIFINGVFSHIEDTRTTEEAHQENLVRIRELVTAKILEAGYDEVWQRNAALGVIDAEQVEAGKTFIANLRTAYHDYKARLLTATRDEADAVQFVAPPVPEGM
Ga0335036_0020970_610_750	F045612	GGAGG	MATAYTYGDFIAALEYLEAEGYIERFFDETGAECVRICEGAEDCEV
Ga0335036_0020970_747_980	F088510	GAGG	VSADDHSVLIEIREKVARMETRQAYILELLTDHKTKMDRIEQEAHSIKGRVWLVSTIVFGVLAAAWEIIKNRLLGHP