Scaffold Ga0335036_0006108

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0006108
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10155
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (16.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F008081	Metagenome / Metatranscriptome	339	Y
F024318	Metagenome	206	Y
F036704	Metagenome	169	Y
F047062	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0006108_1230_1475	F036704	N/A	MWIEIDVMLAGSTMDWKELGLDVKHEFVRRMVRIEDIAYVQELVNDIQVIYFYDKTSCLIRGSYTEIRDELLHLDQEGQLD
Ga0335036_0006108_2188_2439	F008081	N/A	MEESEILNPFGYGKASRVIDENRKPTEWWIDYISINQVIAENEFYVLFEEGFLIKKGRSKFQSSQYLKGDRFRSFRDFHEQVG
Ga0335036_0006108_2881_3135	F047062	N/A	MNYETENFYDQEITFTYEGQDYLWIGDYTIEHTGEDESEFAPAYGEMEITIDHTRSLSSYEHGYEVVPTRSMLMELEVEIERNY
Ga0335036_0006108_4181_4327	F024318	N/A	MKPYLYLGKFIQRPGDLAPKGVRSTCQTEKLPFNETFERIWQLASTKA
Ga0335036_0006108_6327_6956	F008073	N/A	MREIILKHLQKMEFVCGLKQFKEYKESDAIELTECIHKLFRSYGWMNESRVDYILHAGMRGQYGDFYHVNEKNVSVWINQYYAHHQSQIVQEVQAMNRVDREPTEEEIAQWIEIGKQIFRDNYQSAKESGFCKDLAEWGGNWFNKFQEKGILKPWEYPVEDIEKDVRRELRISTRYIDEITVGAKSKNKIWKLFILESIKENRNLDKLI
Ga0335036_0006108_680_1228	F001775	GAG	MEFSTDNQKIQIAILSFLAGVILAFVVYPRPEQETVYKFETKVESDTIYTRTVDTVYVPKMWIKSQVLRDTVLVNYQPKISLFKASIPSEYGSTHLSGEVLGEVLKMTATNDFKIPVVTNTITETKTQTIIKKPKGIYLGAGVNSLLDPSVKVSYLDNKYLFQYGYQPVTKIHSLGISKKLF
Ga0335036_0006108_9923_10153	F005529	N/A	MLPKSPLDYSLEIRYKLSSGEWSAWMNKGKGSFQNIEIVQRQIRLLAASYYGREKEIRFEWNGWLCDFAGLPTGEVI