Scaffold Ga0335036_0005203

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0005203
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11012
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034906	Metagenome	173	Y
F072283	Metagenome / Metatranscriptome	121	N
F102505	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0005203_4073_4222	F072283	GGAG	MNTMQDLINAIKPILPNALIIDTDSGILIETGLELGLGGLLQTIEREGE
Ga0335036_0005203_5535_5753	F034906	GAG	MKNTHRVKAAADQAVRQRNYRRARERAFTRLANAFPDIYRAYLEEEKLSDEKMGKKWLDIDGNTSLTDTRSS
Ga0335036_0005203_9497_9715	F102505	AGGA	MRKSNLNLFDGIGTWKRRPIRAGKKTYMPSHKRWGKITVTKMTPTPEGVITTTEILQPVQEVVVEEEVKEEE