Scaffold Ga0335036_0005113

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0005113
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11131
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000714	Metagenome / Metatranscriptome	924	Y
F002387	Metagenome / Metatranscriptome	565	Y
F009530	Metagenome / Metatranscriptome	316	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0005113_1138_1305	F009530	AGAAG	MTITYSIWQGSKLISIDNVAHDPKAIDHLINSLNASELGKVKKFTANVMSIKVGE
Ga0335036_0005113_1495_1617	F085708	GGAG	MNRLLTTLVQLSIAIPALYMGRMMWHELKQDVREVIKDFR
Ga0335036_0005113_6591_7088	F000714	N/A	VEHATIQPTQTKEEKMETTEHLVPDTYNTDLLVTYKKINGFSNPEYITDKVRNIEWELHNARTNSKAVATMQSKIDSVKDIITDAYADSGDQDTLRAIAEALDIELVKEVEWTASIEVSGTYSYNILDSDYEPDLTDEITDAIYAESHNGNIEITDQEVCNVRES
Ga0335036_0005113_9174_9392	F002387	AGGTGG	MASFLEDVNQMILDAVMVDIGAQLFDEWMNANLDEGQYYADKRFAEMSGDEYVMHEFNKFYELKEEDEDYLC