Scaffold Ga0335036_0000943

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0000943
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26308
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (13.04%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F008073	Metagenome	339	Y
F014605	Metagenome / Metatranscriptome	261	N
F024318	Metagenome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0000943_15774_16370	F008073	N/A	MEFVCGLKQFKEYKKEEANELLGCLSKLFGSYGWMTEDRVNYILHAGMRGQYGDFYHVNEKTVSVWINQYYAHHQSQIVQEVQALNNKEKEPTNEEIAYWIEVGKQTFRDNYQEAKETGNCKHLADWGIYWFNKFQEKGILKPWDFNVQEIESDVRKELRLTTRYVEESTVGAKTKNKIWKLFILQAIKDNKNLDQLI
Ga0335036_0000943_18486_18626	F024318	N/A	MRNYLYLGKFIKRPGDLAPRGVASTYNEEKLPFNETFERLWNLMKS
Ga0335036_0000943_20915_21463	F001775	N/A	MNFSTDNQKIKIATLAFFAGVIVAYIFFPKTESETVYKFETVTNTDTLIVEVKDTIYIPKTKIKTEFLRDTVLINFKPQISQFNASFPFEYGSTNVSGEVLGEVLKITATSDFKIPVVTNTITNTETKTIVEKPKGIYLGASVNSFLQPGAKVSYLDNKYLFGYQYQPLEKLHTVSVSKKLF
Ga0335036_0000943_23618_23905	F014605	N/A	MIVNLAIALTDIEGNKIKNENGEDVSLSKMVGNALFSAEEKDDPIRLYELAKKIYYSEGDIELSKSDADLVKEKVKAKGFTVLVLGPLYEALKEK