Scaffold Ga0335036_0000633

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0000633
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32190
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (80.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002420	Metagenome / Metatranscriptome	560	Y
F012869	Metagenome / Metatranscriptome	276	Y
F015970	Metagenome / Metatranscriptome	250	Y
F022157	Metagenome	215	Y
F030692	Metagenome	184	N
F042869	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0000633_21613_21876	F002420	N/A	MELLFNGVGNEECVMTFRQSTIKYFKDIMRARTIHEVIAKELQEAHLRKLEAETATEYSRAAIQYNDARIARLQKRLLEHTQEGDYT
Ga0335036_0000633_22539_22799	F042869	GAGG	MNKLIGIDDTIKNHVPIGSIELKLAVARAEGYAIRVEETRYHHVVDGIVVTSVDESKPKYYFFNDRPLPLLDPYRIAMEFYLKERL
Ga0335036_0000633_22792_22911	F022157	GGAGG	MWDVLVTFMLMMFGAFVVIAFGAILIGALYFLQNEADNE
Ga0335036_0000633_25240_25530	F015970	AGGAG	MTAFNKAVWESYQQLNDDDIMEAISGSVAIPLAIKSGDWEYAFQFIRDRIENKMTRRAEFYLYSKTKTPSIDDEDELRTLRILWLKEEYKGDKDET
Ga0335036_0000633_27604_27801	F030692	GGAG	MSETVDKKGIVIKFDPVEYEAIRAIGEGNLSEGFRVCLRWAVHFHAIGLRSDDNLEYVGLCTVAD
Ga0335036_0000633_28543_28815	F012869	AGG	MIAIHTKYIPPTNTKGSRIKAYTVGNSMRKGFQATISYPHEYSHEVCHFQAVKALVEKHKLDWDLADMRYGDSADGKGYSFCFDNSKVGA