Scaffold Ga0335036_0000473

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0000473
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36351
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (80.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009956	Metagenome / Metatranscriptome	310	Y
F052469	Metagenome	142	Y
F083926	Metagenome	112	N
F100710	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0000473_17902_18084	F083926	AGG	MNEIDDSNLAQCEYCGWVVDWDEVPRARDISGEIVTCCEECNEGESFVNYPSKRFAIAEK
Ga0335036_0000473_20781_21083	F100710	GAGG	MTIELTRQEAEEVVKILRMMYTNHALTKAIADRLAGEPLIEFPKEPEPEEVVDAIWKVVDAGWKDLSTAEIKAIWNLTKKPSEFSTMLLAKIKERNDISR
Ga0335036_0000473_26805_26999	F052469	GGA	MGRPRKNPDDPKWQEPKESPANDDWRIFFAAALGGLIARGSGQTYDQMIKTASEIATEAQKSLS
Ga0335036_0000473_28823_29035	F009956	GGCGG	VADNKKRDDENIPWTLLITVMAVLLTFFIVMPILAFMYYDMYYAHQAAIIEIRKMKELRREILIERMYRD