Scaffold Ga0335035_0360265

Overview

Basic Information

• Taxon OID: 3300034105
• Scaffold ID: Ga0335035_0360265
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 838
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024226	Metagenome / Metatranscriptome	207	Y
F070994	Metagenome	122	Y
F075680	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335035_0360265_212_439	F070994	N/A	MLGMNGTKATDFRRYFVRWVVEYVKNESGTDQIQILGYCVYDGETCTTLFEHADKQVCEKVLKMILEGEGNGIQK
Ga0335035_0360265_423_797	F075680	AGGAG	MGYRSDVMAVFYTQDPNEFPSIKLFIDENIPEWCRGDEFMSTFVGNHDLRGIKFTMSDVKWYPSYPDVKGFEDALDKFEKLSDGGDKWMWEFVRIGEETQDVEERWGDHSHNLLHVSRTIESDV
Ga0335035_0360265_59_199	F024226	N/A	MEYLSRFDAEWQAVFAINIAKNPAKQSIAFSSSAFKDWVVKNQDLL