Scaffold Ga0335031_0545836

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0545836
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 695
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013517	Metagenome / Metatranscriptome	270	Y
F045692	Metagenome / Metatranscriptome	152	Y
F074791	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0545836_2_304	F074791	N/A	QYTEFFHKNVRFAAKLYLDTCNILNNEGVGNIDFKTVLDMYQEAVYTTNDDCRRYQKSNNPDALKDDVIYGLGPTREELMAEVQALSAKVDRLLEVTTQA
Ga0335031_0545836_395_508	F013517	N/A	MFESLFAAVLPVMKDILWAAAGALLTYVLNKFQSQFN
Ga0335031_0545836_512_694	F045692	N/A	MSQITQVKLKDLSVIKLYEHYAALEKSLPLLTPESQELAQAELESCADLRSEKIDRIYYA