Scaffold Ga0335031_0051882

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0051882
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2955
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020851	Metagenome / Metatranscriptome	221	Y
F037701	Metagenome / Metatranscriptome	167	Y
F054581	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0051882_1869_2060	F054581	AGG	MCPNCNNPLIPILYGYSNPKYVDMHKQGLVFLISTTYHTKNDPTSYCKKCEESFDIKLDYNFN
Ga0335031_0051882_2245_2370	F020851	GAG	MSEDIVDLAISMTEIDTGMQLPLEEREAMKQRILVRLENLN
Ga0335031_0051882_2385_2543	F037701	AGG	MGKLMIKSKEWRVSNRVWLGVGFAPRRIALGFSVDKFNTNIDFLWFWVSLEY