Scaffold Ga0335031_0034692

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0034692
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3671
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014495	Metagenome / Metatranscriptome	262	Y
F025684	Metagenome	200	Y
F056413	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0034692_1484_1624	F014495	GGAG	MIKPQQAAPMGRKHRVSSDSAWPLRGLDGKTFAERKAQEQRKCQDQ
Ga0335031_0034692_2328_2504	F025684	GGA	MTDDELPDRYTERAAETLAYRLMEYLEFLGVISADHVAYLRYPPIDLIEDAEMALRDE
Ga0335031_0034692_2546_2698	F056413	GGA	MDAELMSYYEHGLRPAYMAEQMGLTIASVEGRYHKLKRAAKADTKKPPAE