NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0007296

Scaffold Ga0335031_0007296


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0007296 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8171
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006842Metagenome363Y
F011484Metagenome290Y
F014714Metagenome / Metatranscriptome260N
F026822Metagenome196Y
F029678Metagenome187Y
F037113Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0007296_134_526F014714GGCGGLGIELKEPELLDYLKEFYYPDLEKSEEFDNWDCISLEHKMFIELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGIWGFNLSAIPQPKWEDKWLPITTEFANRSSRTKLVGFLKLEDGILF
Ga0335031_0007296_3541_3711F026822AGGMSEPRYLEGDEYALNGAELDIVKCKECASEYDYAQYHSYTCSDCEDKMIARERERV
Ga0335031_0007296_3704_3859F029678AGGAGMSKVNGFIIFNQETGQKMATLPLTIPISSTIEAYEKAGHKVTWGWEKGEDE
Ga0335031_0007296_3987_4127F006842GAGGMKATPAMCGDHLVPISECDCLSYMREIASSAERLIQLAQEREELTK
Ga0335031_0007296_4127_4315F037113N/AVGEGESERYLLTRERESMNWTVWVGGSEINWKHYSHKIDAERVAEFWREVKGYDDVIVEEVK
Ga0335031_0007296_4372_4536F011484AGGAGGMRELEQFLNTEAEWVMERLSTGTEIADRNYYQGRVDQLAQVRRYLGQAQLIINK
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