Scaffold Ga0335031_0001386

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0001386
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18366
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (15.15%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F008073	Metagenome	339	Y
F014605	Metagenome / Metatranscriptome	261	N
F024318	Metagenome	206	Y
F030017	Metagenome	186	Y
F034898	Metagenome / Metatranscriptome	173	Y
F104771	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0001386_2310_2675	F034898	N/A	MTRDEIITELNHRATQKYLVYLALQEIMLDYYEDLTMLKAFDVDLRTKHKNMINALKRKSTEAFRFLENYDGGEVTIRQFHEFVTLFERLHNSIDQGGNLFHNCLSAIEQILNDHEGTQP
Ga0335031_0001386_3349_3681	F030017	GAG	VETKEIMDEVKRLYIEGLTRKKIAAKLGLDSEQVGYILYTKLKLHEIYPRKLMDENIFKILTDQQITRILTLATYGYCCREIAEDQNLEFRKVKKLLDVAESKNMIEKKV
Ga0335031_0001386_3663_3800	F024318	N/A	MKTYTYLGKFIQRPADLAPRGVKSTYQNEKLPFNETFERLWKLKK
Ga0335031_0001386_4835_5110	F104771	N/A	MGKLFKDSEMHLDQEVLFYYEGEEYCWTGHYEVKQCGEESDWDYCGDSEFEVEIETTKSVTKFNEQTNDWDEVAPTNSLIYEVILHIERNL
Ga0335031_0001386_6406_6954	F001775	GAGG	MKELLDDERIRIAIIAFLMGVVLTFIIFPKPEQETVYKFQTVTKTDTLFVTYSDTVYLPKTRIKTQVLRDTILIDFKPKISQFNASFPFKHGSTSVSGEVLGEVLKISATNDFKIPVVTNTITNTETRTIIQKPKGIYLGAGVNSMLEPSASVAYLDNKYLFQYQFQPLQKVHQIGVSKKLF
Ga0335031_0001386_716_1312	F008073	N/A	MEFVCGLKQFKEYKKEEASELLGCLSKLFGSYGWMTEARVDYILHAGMRGQYGDFYHVNEKTVSVWINQYYAHHQSQIVQEVQALNNKEKEPSNEEIAYWIEVGKQIFRDNYQYAKETGFCRDIAEWGMNWFNKFQEKGILKPWEFNVEEMENEVRKELRLTVRYVDETSVGAKTKNKIWKLFILDAIRQNKELDKLI
Ga0335031_0001386_9137_9424	F014605	N/A	MNVNLAIALTDIEGNKIKSENGEEMLLSKMVGNALFSAEEKEDPIRIYELAKKIYYSEGEIELGKSDADLIKEKVKAKGFTVLVLGPLYEALKEK