Scaffold Ga0335031_0000910

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0000910
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22768
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (18.18%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F008073	Metagenome	339	Y
F008081	Metagenome / Metatranscriptome	339	Y
F030017	Metagenome	186	Y
F034898	Metagenome / Metatranscriptome	173	Y
F044503	Metagenome	154	Y
F055561	Metagenome	138	N
F069854	Metagenome	123	N
F095170	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0000910_19732_20157	F069854	N/A	MRNIKPFIRKAYWTALNNTITYKGALVPCYDTFAPDTAVFPYILIGNQTQEDDKDNQQFNYITTITLDVVTAGIAPYGRIDADLIADSILQIVCLYPENYLALQVGKIVTAKLVQQTSLSSITDTNIVHREIMTIENWIDG
Ga0335031_0000910_20150_20614	F095170	GGA	MGKVNGSALFVTVGLNQVAKSTSYELSAEMGQLDKTSNESGFFADHISRLASWSLSSESLYIQDGFSFGDLFNAYVNRERVYLSAGQDDNLTFIGLAMIESISQSAPMENVATISASFKGVGGLYPTILPAERFIVDELFEIIIDQDGNFLVYT
Ga0335031_0000910_21562_21855	F055561	N/A	MSFAEYQSIAYGYQIRQSKEENLFRAIWVQLANVNVTRKADIIRKPEKYWKIPLIDGKSIVIPTAEEKAKAYEIGLKWQNLKFEEEASFDTITNKIQ
Ga0335031_0000910_2299_2847	F001775	N/A	MRQLLDDERKRIAIISFLIGVLLAFVIFPRPESETVYKFESVTETDTLIVEVKDTVYIPKTKIKTQVLRDTILVDFKPQISQFNASFPFEYGSTNVSGEVLGEVLKMTATSDFKIPVVTNTITNTETKTIVQKPKGIYLGAGVNSLIQPSASVSYLDNKYIFQYQFQPLQKIHQIGVAKKLF
Ga0335031_0000910_3063_3335	F008081	N/A	MLLSCGMNEDKILNPFGYLEATKVLDENRKPVDWWLQYLEFNQAVAENEFYILFGDGLLVKKGRSRFRTSQYLNGEKFKSFKDCHNQSSK
Ga0335031_0000910_4894_5226	F030017	N/A	MELDEVMIKIKALYLEGLTRKKIAKLVGLDQQKVGYLLYTKMRLHELYPRKLMDENIFQILTDHQISRILTLATYGYCCREIAEDQNLDFRKVKKLLDVAESKNMIEKKV
Ga0335031_0000910_5899_6264	F034898	N/A	MTRDEIIEELNHRATQKYLVYLALQEIMLDYYEDVTMLKSFDNDLKTKHKNMINALQRKSTEAFRFLENYDRGQETIKQFHEFVTLFERLHNSIDKGGALFHDCLNAVELILDNNEGTKF
Ga0335031_0000910_6242_6391	F044503	N/A	MRGRNLTEYQKQLIFEAWQDRKQIKVIAQEMGLSYGCIYFQLKKRSLVG
Ga0335031_0000910_7255_7884	F008073	N/A	MDEIILTHLRKMEFVCGLKQFKEYKKEEANELLGCLSKLFGSYGWMTDDRINYILHAGMRGQYGDFYHVNEKTVSVWINQYYAHHQSQIVQEVQALNNKEKEPTNEEIAYWIEVGKQTFRDNYQEAKETGNCKHLADWGMYWFNKFQEKGILKPWDFNVQEIESDVRKELRLTTRYVEESTVGAKTKNKIWKLFILQAIKDDKNLDQLI