Scaffold Ga0335031_0000802

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0000802
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24300
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (24.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F065767	Metagenome	127	N
F085401	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0000802_11482_12018	F001775	N/A	MEDQRIRIAIVSFLIGAVLTFVIYPRHEQETVYKFETVTKTDTLIVEVKDTVYVPKNKIKTEVLRDTVLINFKPQISLFKTSIPSEYGSTHVSGEVLGEVLKMTATNDFKIPVVTNTITNTETRTIIQKSKGIYLGAGVNSLLKPSASVAYLDNKYLFQYQYQPFEKVHQIGVSKKLF
Ga0335031_0000802_17301_17747	F065767	GGA	MTSLTQEQKDEIARLYKLKIMNKNIATIMNISRHLVNNYIYKDYLLTNERSKNTCSHLKHADQVLELYKKGLPYKEIMLMTGVKYHHLCEILKLTNERRVKSLSIKIVRQIERMVEEKWRTCDIAKELNLEYNRVSHWVRKAKREGVH
Ga0335031_0000802_19657_19839	F085401	N/A	MMTATEYGVLRGFTEKSTRVHQIIRSGVWPEEWVYPPRKLGNQWVVFVSSTWIGNGRGSL