Scaffold Ga0335030_0779613

Overview

Basic Information

• Taxon OID: 3300034103
• Scaffold ID: Ga0335030_0779613
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 563
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011938	Metagenome / Metatranscriptome	285	Y
F013891	Metagenome / Metatranscriptome	267	Y
F080048	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0779613_183_380	F011938	GGAGG	VKKYYDTTHVVYIHSEKCHGTVEKLGAWASIVKYNKNGMEYSELMENEEFSIIDEIVFKHIEESQ
Ga0335030_0779613_32_199	F013891	GGA	MYPDFLALRLYEDNFLQFEGTKKEMVIDYVGKIKRLLESYGVRCELEGKPSEKVL
Ga0335030_0779613_380_562	F080048	GAGG	MEKILCYSCNKSKNKLDVKKSSLLPINLFICETCSSSKFEPRWVIILAGRSQGPDHVKEY