Scaffold Ga0335030_0069326

Overview

Basic Information

• Taxon OID: 3300034103
• Scaffold ID: Ga0335030_0069326
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2610
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004793	Metagenome / Metatranscriptome	423	Y
F079999	Metagenome	115	N
F100733	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0069326_1176_1595	F100733	AGGA	MRARNTETRFACSCNGCRNYPTRPAEIWHQDQISSKESGTFYFRKDTMRFFSSRIVDFKAFNRGQEVESLSVIVSSRHGYEGASRYYEIVMLCPYGTIHREGKSFESLRLARKNWESVISDFAPCSCHGCELDREQVSA
Ga0335030_0069326_1835_1996	F004793	AGGA	MTLEQARKIVGNQPNWALKNMVKALKMMPILNTAQDEERLAAALVVLKSRKVK
Ga0335030_0069326_667_804	F079999	GGAGG	MGDIFELSFRWQDGFIQFLIYALVIYLGLVIISKITDKREREGKK