Scaffold Ga0335030_0012845

Overview

Basic Information

• Taxon OID: 3300034103
• Scaffold ID: Ga0335030_0012845
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6403
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F051794	Metagenome	143	N
F052570	Metagenome / Metatranscriptome	142	N
F079999	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0012845_2358_2663	F051794	GGAGG	MKTIDKRRAYSEKRAVWLRNYQRARARALTRLAQQYPDQYKDLLEQERLADESMAKTWLDITGATSISSSLGVLTDRNNNTSRSEQADGDEQDEGNVGGEG
Ga0335030_0012845_2947_3120	F002827	AGGAGG	MNKEYYQAKADLCRNLAIKQMVEGEAKEAGANLIRMVNALNQINLINYKEEKEYEAS
Ga0335030_0012845_3580_3984	F052570	GGAGG	MKYKLPKGVELEILDYDAERKDRQDSAFYTWGDTSDVALLTYQGREYRVVCVGEMRILYKGKIIRYSNDLISAGIKRDKDLSKIDDSGGEWINNSWFEVYDYGSGEYTGEVYHEVKDAIETVANWIVDKELVNV
Ga0335030_0012845_4206_4361	F079999	GGAGG	MGDIFELSFRWQDGFVQFLIYCAIITGGLYLLSKIQIKEREGDNEYKPNKP