Scaffold Ga0335030_0006139

Overview

Basic Information

• Taxon OID: 3300034103
• Scaffold ID: Ga0335030_0006139
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9342
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007222	Metagenome / Metatranscriptome	355	Y
F015073	Metagenome / Metatranscriptome	257	Y
F055557	Metagenome / Metatranscriptome	138	N
F085385	Metagenome	111	Y
F098193	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0006139_1021_1527	F055557	GGAG	MKLKITHEEEWTAAKVAIERVEEIEGKPDHISRYNKSLSFHDYICEIAESVGAEIAVAKYFGIRDFNPRASRFKRTADVGSIIEVKWTKYDAGSLIIYDGDRNTDIAILVTGKSPNYVLKGWIPVVIAKNQKWRRRDQPTYWVEQYNLHPIENLRRSSHGEATLPMSG
Ga0335030_0006139_1721_2332	F015073	GGAG	MGFLDNYETVNQKVIRLHATYPTNRIETSIIDWNSEKGYILIECRIYRRYEDDKPAAIDYAHGMVGAYNPQMKRWYIEDTVSSAIGRCASVVLGTETKPSLESMQQVETMPKAFIEEDLWSKPFGEDGFSTAQSAISEIQTKLGGELVAEAPICAHGHMVLREGISPKTNKPYKGHVCVEKVKSNQCSPIWYEVTSSGGWKTK
Ga0335030_0006139_2332_2481	F085385	GGAG	MYAFQEVAMWMLFGVFTGFMAGYAIGRKEGKREGFIRGKVAARRNAEIR
Ga0335030_0006139_3754_3960	F098193	GGAG	MKPMVKIHDMSTGEVIEREMNAAEFKQYEADQVEAIAKAEAVEAKASAKAALLDRLGISVEEAKLLLS
Ga0335030_0006139_7345_7884	F007222	GGAG	MASKAKQGRFEITVDPVEFRNLIGLLNALDKESQDEIRSKALPLSQRLAGQLLMFSQSAPSPQTKLVAQSIVAKRDRLIRVDVGGTKKVGRKYGGEQSKSGKGNKVRQQSAPAGALLWGTEYGSGRGTDFLGRAYTNRFKAARNKRGYWMTPAVDYYTPIVAREYAQMVQDVVKKLRLD