Scaffold Ga0335030_0000334

Overview

Basic Information

• Taxon OID: 3300034103
• Scaffold ID: Ga0335030_0000334
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45345
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (76.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002597	Metagenome / Metatranscriptome	544	Y
F017833	Metagenome / Metatranscriptome	238	Y
F096915	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0000334_28791_29009	F096915	AGGAG	MISSNIYKYKPQDFARCESNPLLDQCKRCGRNVHMNPVHSGWQTWIGPWTGHGPCPNGDFMEIKNENQQTNL
Ga0335030_0000334_39737_39988	F002597	GAGG	MSNLLIYDPRHHTFETWACLMVELYATNQVPIPSDQTDWKEWGNGLKAIDVFVNEGIPSTDTFDNWQLWAQELMNAVNSMSNN
Ga0335030_0000334_5618_5818	F017833	N/A	VKTIGDLIGGIKARQAEIAASLAAGHAANWESYNRVVGHNQGLQEALDILNELMKEPDEHERTGSR