Scaffold Ga0335029

Basic Information
Taxon OID	3300034102 Open in IMG/M
Scaffold ID	Ga0335029_0006417 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034102 Open in IMG/M

Scaffold ID

Ga0335029_0006417 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9239
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (86.21%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

9239

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (86.21%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000714	Metagenome / Metatranscriptome	924	Y
F002071	Metagenome / Metatranscriptome	596	Y
F002245	Metagenome / Metatranscriptome	578	Y
F003690	Metagenome / Metatranscriptome	473	Y
F008132	Metagenome / Metatranscriptome	338	Y
F009530	Metagenome / Metatranscriptome	316	Y
F019325	Metagenome / Metatranscriptome	230	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0006417_1389_1898	F000714	N/A	VEDATIPYTDSPLPTKEETMEDTTTSAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVASLEWDLHNGRQSQKNVTTLQSKIDTAKEIIAEAYPDSQDQDTLRSIAEALGIELTRTIEFTATIEVSGTVEVDLLEDYDLDDDITDNLYVDSQSGRIEIGDIEVCHVREA
Ga0335029_0006417_4337_4495	F002071	AGGA	MTNATLEVGQTYTTTTSGITGVIKAVDNHPSGVNRILLDVNGKERWTSTPNN
Ga0335029_0006417_4851_5075	F002245	AGG	MSNLIKVPHTVVFEAIIDLDKIPANLLPTLISLDEKTMTEMCKEATLHALSMSNVLKTANEFNTWAEMTIKEGN
Ga0335029_0006417_7010_7132	F000447	AGGA	MGYIEIFRINEEGAGWVDLSEATPEEMLDLEIGLFQEGAI
Ga0335029_0006417_7820_7942	F085708	AGAAG	MNRLLTTLVQLGIAIPALYMGRLMWQELKEDVREVIKDFR
Ga0335029_0006417_7942_8097	F003690	GGAG	MIPSGFELVISNEYGIELDSFLGAIYLPWHTVAIATALLIAYKIYKRKKNK
Ga0335029_0006417_8098_8283	F008132	AGGAG	MTKWDTIQADVQDMYAHLLEQEAYEQALAEQEDVFGFAKAIEIDHLTDEQLDEVFNMFGD
Ga0335029_0006417_8283_8456	F009530	AGAAG	MTITYSIWQGSRLLSIDNVAHEIKAIDHLMATLNASELGKKVKFSANIQSIKTGENK
Ga0335029_0006417_8707_8877	F019325	AGGAG	MTQLTETLFSTIVHEYHNGGVKSSYGLDSYTRKELLKFLFSSKSCNCINCLDKEVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335029_0006417

Overview

Ecosystem & Geography

Associated Families

Sequences