Scaffold Ga0335029_0002362

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0002362
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14986
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007222	Metagenome / Metatranscriptome	355	Y
F055557	Metagenome / Metatranscriptome	138	N
F085385	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0002362_13153_13686	F007222	GGAG	MASKQGTFAIQVEPAALRNLIQTLNLLDKETQNKVRDAAYPLSQRLAGQLLMFSQSAPSPQTKLVAKSITAKRDRLIRVDVGGSKKVGRKYGGEQSKSGKGAKVRQQSAPAGALLWGTEYGSGKGTDSIGRPYSNRFKAARNKRGYWINPAVDYYTPIVAKEYIDIIQTIIRKVGLD
Ga0335029_0002362_4465_4614	F085385	GGAG	MYAFQEVAMWMLLGVLVGFTAGYTLGLKDGKREGFIRGKIAGRKNVEIQ
Ga0335029_0002362_5422_5928	F055557	GAG	MKMKITHEDEWTAAKVAIERVEEIEGKPDHVSRYNKNLSFHDYICEIAESVGAEIAVAKYFGIRDFNPRASRFKRTADVGSIIEVKWTKYDAGSLIIYDSDRNTDIAILVTGKSPNYVLKGWIPVTIAKNQKWRRRDQPTYWVEQYNLHPIENLRRSSHGEATLPMQG