Scaffold Ga0335029_0001481

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0001481
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18694
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (73.68%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006385	Metagenome / Metatranscriptome	374	Y
F007263	Metagenome / Metatranscriptome	354	Y
F013527	Metagenome / Metatranscriptome	270	Y
F024314	Metagenome / Metatranscriptome	206	Y
F027847	Metagenome / Metatranscriptome	193	Y
F056558	Metagenome / Metatranscriptome	137	Y
F062758	Metagenome	130	Y
F071231	Metagenome / Metatranscriptome	122	N
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0001481_13428_13598	F024314	N/A	MDSDQQKLTPEQVQAILLFQIEQKLRMHIALQVESKFHGKYHNESHEIAQFIRNMS
Ga0335029_0001481_13591_13782	F056558	AGTAG	MGILDNLENAWDEEFSFESKPMKETDAMGREKFWEDLGRPEETSLAVKLFSETCCTDCSCKNG
Ga0335029_0001481_14030_14218	F093845	GGGGG	MIKATLTTTMGTTREMSFNTKEHLLEFIELFEATLPLGTAVNIDAPLVGIHSGWVQGKAPKI
Ga0335029_0001481_14219_14341	F027847	AGAAG	MNPFTAVIDWIDENGDFGAPIGAFIGVVIAIALCFIFGGN
Ga0335029_0001481_16501_16701	F071231	AGGTGG	MMTRKDYVKVAEILSNYFATSVFDEQGEMLFADLVDEFSLMFESDNERFDANRFAIACYKELEMSN
Ga0335029_0001481_16698_16850	F006385	GGAG	LILDNGTLIAIVIALAGSVGMMIAFWQRNVQLEKEIRRLQVALRTERLKK
Ga0335029_0001481_17369_17536	F007263	GAG	MIKEYIDENEFYLIKDEQRYCCDESQFKYVCKAHGETMGCYFCEFDYSTTCEEQH
Ga0335029_0001481_17757_17921	F013527	AGAAGG	MEIFEFNTFINVEAESYDEAIDVFQFQLKYGINKDNVYVADISQLTNNNESVEV
Ga0335029_0001481_6833_7429	F062758	AGG	MADILLSNEDLTVFGGPESISLDLDIGPQGDRGSIIIGTLGDPRDATVASYIVQDVQALDIAVDANPNSPTYRTVFQRIATPTGLQWTPVVSLKTEFYSSIKTLPAENGKITIPPINVTEIYLFQESSTVDSSNFSVQYSISSPDSGGPLATTLVVKELNTSSGFLALPLEIKGVEYDGANWIPMTGTKNVHLFITVV