NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335027_0104329

Scaffold Ga0335027_0104329


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0104329 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2156
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F015702Metagenome252Y
F033321Metagenome177Y
F037113Metagenome / Metatranscriptome168Y
F040479Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0104329_1622_1831F040479GGAVNPASTTLLAQETLRANQLAQLSELLSSLENVVENLNYKSFTLYDTLNTVIEEVSAVLSDTPTDEAGTK
Ga0335027_0104329_211_351F037113GGAGMSKWTVWVGGSEINWQHYTHKIDAERVAEFWREVKGYDDVVVGEVA
Ga0335027_0104329_351_509F000821GGAGMNEEYLRAKFNLCLDQAEKNIKEEDIALAIKNLERANSAMARLFGLEEEADE
Ga0335027_0104329_502_648F033321AGGAGGMSRELEVLRAEYKRAVESPIFDDPKDYCIILDLIQDRINEIEGGSNDN
Ga0335027_0104329_638_811F015702AGGAGGMTIREVELEYTVHNLVRLSEKVWGENSTEYLAGRLDSIITYKQMKVLIDSLKEEAGE
Ga0335027_0104329_804_1055F001477AGGAGGVSNVYTIHPKKSDLILFYEVLTPEGENEWGGANAEQCIQWLSLAPSGSRVLVSAWDSDEEDAHLVGQSIDITEIIQQARKVGR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.