Scaffold Ga0335027_0030338

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0030338
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4518
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003067	Metagenome / Metatranscriptome	509	Y
F007027	Metagenome	359	Y
F046904	Metagenome	150	N
F060716	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0030338_2580_2741	F007027	AGGCGG	MSESIRFECRSCKKITEQIERIVTDNLPANVKVLQCKVCSKMSVCLLVNYAGI
Ga0335027_0030338_3905_4066	F046904	AGG	MNSLDLIVVGMVCLFIGLFIYAAYEMGYKVGLGEGYLRGRNIAKALKEAEAKR
Ga0335027_0030338_4173_4388	F003067	AGG	VSQAQAYIAVALGIATLSGFMAGLVRHLVKYYLSELKPDGNGGHNLVGRVERIEIRVDKIYELLLEERLAK
Ga0335027_0030338_4389_4517	F060716	N/A	GALYLSGISDPKVLANAFLAGLIGPVLKAIAPNEKQLGIGAK