Metagenome / Metatranscriptome Family F060716

Basic Information
Family ID	F060716
Family Type	Metagenome / Metatranscriptome
Number of Sequences	132
Average Sequence Length	43 residues
Representative Sequence	LYMSGITDPKVLANAFIAGLIGPLLKAVQPNEKQFGIGAK
Number of Associated Samples	104
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	3.17 %
% of genes near scaffold ends (potentially truncated)	87.12 %
% of genes from short scaffolds (< 2000 bps)	86.36 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Duplodnaviria (76.515 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (26.515 % of family members)
Environment Ontology (ENVO)	Unclassified (70.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (56.818 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 1B570J14230_101485271 2B570J14230_101643623 3JGI25926J51410_10440021 4JGI25923J51411_10725611 5JGI25930J51415_10159894 6Ga0066177_100264011 7Ga0066178_101339573 8Ga0066179_101300911 9Ga0068877_105722551 10Ga0049081_102577091 11Ga0049081_102884451 12Ga0049085_102721883 13Ga0078894_108810311 14Ga0078894_109930644 15Ga0073910_10069662 16Ga0070749_107386221 17Ga0075467_106914702 18Ga0070748_12700681 19Ga0070753_10242051 20Ga0099849_13089553 21Ga0102828_10521714 22Ga0108970_100069591 23Ga0114840_10524971 24Ga0114880_11634943 25Ga0114880_11638393 26Ga0114880_12538763 27Ga0114880_12684452 28Ga0102829_11657571 29Ga0102829_12747881 30Ga0114980_1002080810 31Ga0114977_101447005 32Ga0114970_101632795 33Ga0114969_104316772 34Ga0114969_104864653 35Ga0114964_102794981 36Ga0129333_106357811 37Ga0129333_106559924 38Ga0129336_100349687 39Ga0129336_105611143 40Ga0129318_102602801 41Ga0153805_10406073 42Ga0153805_10569943 43Ga0153805_10865291 44Ga0157498_10416442 45Ga0164292_107014191 46Ga0163200_12740471 47Ga0163199_11198865 48Ga0172374_10754314 49Ga0177922_106767802 50Ga0181350_10622984 51Ga0181356_11121631 52Ga0181356_11566754 53Ga0181356_12272763 54Ga0181358_12783491 55Ga0181357_13386331 56Ga0181349_11684144 57Ga0181346_11925023 58Ga0181346_11996941 59Ga0181348_10640924 60Ga0181355_13819561 61Ga0181355_13872281 62Ga0181359_10269611 63Ga0211733_111066551 64Ga0211735_114272321 65Ga0211729_107264761 66Ga0211729_113877101 67Ga0208856_10159114 68Ga0208723_10605931 69Ga0222713_100663551 70Ga0222713_102726811 71Ga0222712_106695133 72Ga0181354_11436334 73Ga0181354_12312973 74Ga0196905_10834881 75Ga0181351_11190904 76Ga0214919_105711714 77Ga0214919_106765193 78Ga0244775_105270381 79Ga0256299_10701343 80Ga0209615_10055910 81Ga0208643_10276131 82Ga0208800_10105031 83Ga0255086_10143751 84Ga0255077_10337641 85Ga0255075_100402910 86Ga0209651_10827853 87Ga0208133_11414131 88Ga0209356_10352075 89Ga0209357_10105399 90Ga0208975_100802810 91Ga0208975_11739451 92Ga0209553_11334221 93Ga0209033_10461944 94Ga0209442_12799592 95Ga0209107_103844041 96Ga0209354_100295978 97Ga0209354_102025891 98Ga0209400_12219591 99Ga0247723_11416741 100Ga0315909_102352541 101Ga0315904_114525841 102Ga0315901_101057991 103Ga0315274_111137684 104Ga0334981_0460248_2_139 105Ga0334979_0148336_33_149 106Ga0334979_0521278_533_640 107Ga0335002_0620192_423_557 108Ga0335004_0459772_571_705 109Ga0335004_0716734_45_167 110Ga0335024_0602516_409_525 111Ga0334987_0547032_63_179 112Ga0334987_0760766_2_109 113Ga0334995_0518546_543_659 114Ga0335001_0558412_306_437 115Ga0335019_0716669_439_573 116Ga0335028_0710197_45_164 117Ga0335027_0030338_4389_4517 118Ga0335027_0325318_3_152 119Ga0335029_0508995_2_121 120Ga0335030_0470305_3_122 121Ga0335036_0427206_697_843 122Ga0335036_0855996_2_139 123Ga0335050_0330104_575_712 124Ga0335068_0587867_384_500 125Ga0335053_0456364_8_175 126Ga0335054_0574393_490_621 127Ga0335056_0339699_674_790 128Ga0335056_0658823_3_143 129Ga0335060_0492526_14_130 130Ga0335049_0066393_2551_2658 131Ga0335007_0678430_2_157 132Ga0335048_0169699_21_137
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 1B570J14230_101485271 2JGI25926J51410_10440021 3JGI25923J51411_10725611 4Ga0066177_100264011 5Ga0066178_101339573 6Ga0068877_105722551 7Ga0049081_102577091 8Ga0049081_102884451 9Ga0049085_102721883 10Ga0078894_108810311 11Ga0075467_106914702 12Ga0099849_13089553 13Ga0102828_10521714 14Ga0114840_10524971 15Ga0114980_1002080810 16Ga0114970_101632795 17Ga0114964_102794981 18Ga0153805_10865291 19Ga0157498_10416442 20Ga0163200_12740471 21Ga0181357_13386331 22Ga0181346_11925023 23Ga0211729_113877101 24Ga0181354_12312973 25Ga0214919_105711714 26Ga0209356_10352075 27Ga0209354_100295978
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40 1Ga0222713_102726811 2B570J14230_101643623 3JGI25923J51411_10725611 4Ga0066177_100264011 5Ga0066178_101339573 6Ga0068877_105722551 7Ga0049085_102721883 8Ga0078894_108810311 9Ga0075467_106914702 10Ga0070753_10242051 11Ga0099849_13089553 12Ga0102828_10521714 13Ga0114840_10524971 14Ga0102829_11657571 15Ga0114980_1002080810 16Ga0114970_101632795 17Ga0114964_102794981 18Ga0129333_106357811 19Ga0129333_106559924 20Ga0129336_105611143 21Ga0163200_12740471 22Ga0177922_106767802 23Ga0181350_10622984 24Ga0181346_11925023 25Ga0181348_10640924 26Ga0181355_13819561 27Ga0181355_13872281 28Ga0211733_111066551 29Ga0211735_114272321 30Ga0211729_107264761 31Ga0211729_113877101 32Ga0181354_11436334 33Ga0181354_12312973 34Ga0196905_10834881 35Ga0214919_105711714 36Ga0214919_106765193 37Ga0256299_10701343 38Ga0208800_10105031 39Ga0209651_10827853 40Ga0209356_10352075 41Ga0208975_100802810 42Ga0208975_11739451 43Ga0209354_100295978 44Ga0209354_102025891 45Ga0209400_12219591 46Ga0315904_114525841 47Ga0315274_111137684 48Ga0334987_0760766_2_109 49Ga0335028_0710197_45_164 50Ga0335029_0508995_2_121 51Ga0335036_0427206_697_843 52Ga0335053_0456364_8_175 53Ga0335054_0574393_490_621 54Ga0335056_0658823_3_143
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.41% β-sheet: 0.00% Coil/Unstructured: 70.59%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF01464	SLT	3.79
PF00145	DNA_methylase	2.27
PF13392	HNH_3	1.52
PF01844	HNH	1.52
PF01555	N6_N4_Mtase	0.76
PF00196	GerE	0.76
PF13539	Peptidase_M15_4	0.76
PF12537	GPHR_N	0.76
PF12728	HTH_17	0.76
PF05869	Dam	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	2.27
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.76
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.76
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.76

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.06 %
Unclassified	root	N/A	18.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.94 %
Viruses	superkingdom	All Organisms → Viruses	81.06 %

Name	Rank	Taxonomy	Distribution
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	76.52 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.55 %
Unclassified	root	N/A	18.94 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	76.52 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.55 %
Unclassified	root	N/A	18.94 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.55 %
Unclassified	root	N/A	18.94 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	76.52 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	76.52 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.55 %
Unclassified	root	N/A	18.94 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	75.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.55 %
Unclassified	root	N/A	18.94 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	0.76 %

Name	Rank	Taxonomy	Distribution
Freshwater phage uvFW-CGR-AMD-COM-C455	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C455	0.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.55 %
Unclassified	root	N/A	18.94 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	75.76 %

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300013122\|Ga0172374_1075431	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1322	Open in IMG/M
3300001282\|B570J14230_10148527	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	671	Open in IMG/M
3300001282\|B570J14230_10164362	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	627	Open in IMG/M
3300003493\|JGI25923J51411_1072561	Not Available	594	Open in IMG/M
3300003499\|JGI25930J51415_1015989	All Organisms → Viruses → Predicted Viral	1451	Open in IMG/M
3300004096\|Ga0066177_10026401	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1917	Open in IMG/M
3300004124\|Ga0066178_10133957	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	691	Open in IMG/M
3300004126\|Ga0066179_10130091	Not Available	668	Open in IMG/M
3300005525\|Ga0068877_10572255	Not Available	617	Open in IMG/M
3300005581\|Ga0049081_10257709	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	610	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.24%
Host-Associated	Host-Associated	0.76%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	97.73%
Plants	Host-Associated → Plants	0.76%
Terrestrial	Environmental → Terrestrial	1.52%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.76%
Freshwater	Environmental → Aquatic → Freshwater	81.82%
Leaf	Host-Associated → Plants → Leaf	0.76%
Marine	Environmental → Aquatic → Marine	15.91%
Soil	Environmental → Terrestrial → Soil	0.76%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	9.09%
Ice	Environmental → Aquatic → Freshwater → Ice	2.27%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.03%
Lake	Environmental → Aquatic → Freshwater → Lake	40.91%
Lentic	Environmental → Aquatic → Freshwater → Lentic	32.58%
River	Environmental → Aquatic → Freshwater → River	3.03%
Sand	Environmental → Terrestrial → Soil → Sand	0.76%
Unclassified	Environmental → Aquatic → Marine → Unclassified	3.79%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.03%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	2.27%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	3.03%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.76%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.76%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	40.15%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	29.55%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	9.09%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	3.79%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.03%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	3.03%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	2.27%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.76%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	5.30%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.76%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	3.03%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	1.52%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	2.27%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	0.76%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	26.52%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.79%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	3.03%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	2.27%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	2.27%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.76%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.76%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	0.76%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	25.00%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	5.30%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	3.03%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	3.79%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	3.79%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.76%
Freshwater, Surface Ice	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice	0.76%
Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand	0.76%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.76%
Surface Ice	Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice	2.27%

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001282	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental	Open in IMG/M
3300003490	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN	Environmental	Open in IMG/M
3300003493	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN	Environmental	Open in IMG/M
3300003499	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN	Environmental	Open in IMG/M
3300004096	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 2)	Environmental	Open in IMG/M
3300004124	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (version 2)	Environmental	Open in IMG/M
3300004126	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (version 2)	Environmental	Open in IMG/M
3300005525	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005583	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF	Environmental	Open in IMG/M

Showing 1 to 10 of 104 entries

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J14230_101485271	3300001282	Freshwater	YMSGITDPKVLANAFIAGLIGPLLKALQPSEGQFGVTK*
B570J14230_101643623	3300001282	Freshwater	LYMSGITDPKVLANAFIAGLIGPLLKALQPSEGQFGVTK*
JGI25926J51410_10440021	3300003490	Freshwater Lake	LRASAAAAGALYMSGISDPKVLANAFVAGLVGPVCKALQPNEKEYGVGSGGGKSHQVA*
JGI25923J51411_10725611	3300003493	Freshwater Lake	ASAVALYISGITDPKVLLNAFLAGLLGPLVKALQPNQKDYGVNSK*
JGI25930J51415_10159894	3300003499	Freshwater Lake	LASVAALYISGITDPKVLANAFLAGLIGPLVKALQPNEKQYGIGAK*
Ga0066177_100264011	3300004096	Freshwater Lake	YMSGIQDPKVLANAFLAGLIGPLLRASSPKDDKFGVGAK*
Ga0066178_101339573	3300004124	Freshwater Lake	LFMSGITDPKVLANAFIAGLVGPLLKAIAPNEKQFGINSTSTTKKGK*
Ga0066179_101300911	3300004126	Freshwater Lake	VLYMSGISDPKVLANAFIAGLVGPLLKAIAPNEKQFGINSTFTTKKGK*
Ga0068877_105722551	3300005525	Freshwater Lake	ALASVAALYLAGITDPKVLANAFIAAFIGPVLKAVQPNEKQYGIGAK*
Ga0049081_102577091	3300005581	Freshwater Lentic	SGITDPKILANAFIAGLIGPLVKALQPNEKQFGIGAK*
Ga0049081_102884451	3300005581	Freshwater Lentic	TDPKTLANAFIAGLVGPLLKALSPSEKQFGVGAN*
Ga0049085_102721883	3300005583	Freshwater Lentic	AALYMSGISDPKVLANAFIAGLIGPLLRAINPNDAALGLVKK*
Ga0078894_108810311	3300005662	Freshwater Lake	YISGITDPKVLLNAFLAGIAAPLIKALQPNEKDYGISSK*
Ga0078894_109930644	3300005662	Freshwater Lake	GITDPKVLANAFIAGLIGPILKALQPSEKQIGIGSK*
Ga0073910_10069662	3300006005	Sand	ALASVAALYLAGITDPKVLANAFLAGLIGPVLKAVQPNEKQYGIGAK*
Ga0070749_107386221	3300006802	Aqueous	SGITDPKVLANAFIAGLLGPLVKALQPNEKQYGIGAK*
Ga0075467_106914702	3300006803	Aqueous	GRAALASVAALYMSGITDPKVLANALVASLIAPLLKGLQPNEQQYGIGAK*
Ga0070748_12700681	3300006920	Aqueous	ITDPKVLANAFVAGLIGPVLKAIAPNEKQLGIGAK*
Ga0070753_10242051	3300007346	Aqueous	ALYLSGITDPKVLANAFIAGLLGPLVKALQPNEKQYGIGAK*
Ga0099849_13089553	3300007539	Aqueous	AALASVAALYISGIIDPKVLANAFLAGLIGPLFKALQPNEPQFGVGAK*
Ga0102828_10521714	3300007559	Estuarine	YLRAALSCVGALYLSGISDPKVLANAFIAGPIGPLLKAIAPNEKQLGIGAK*
Ga0108970_100069591	3300008055	Estuary	YLRAALSCVGALYLSGISDPKVLANAFLAGLIGPVLKAVAPNEKQLGIGAK*
Ga0114840_10524971	3300008258	Freshwater, Plankton	SWARASFASVVALYMSGITDPKVLANAFLAGLLAPLAKALQPNEKEFGVNSK*
Ga0114880_11634943	3300008450	Freshwater Lake	ALASAAALYMSGITDPKVLANAFIAGLVGPLLKALQPSEKQYGLGSK*
Ga0114880_11638393	3300008450	Freshwater Lake	ALASAAALYMSGITDPKVLANAFIAGLVGPLLKALQPTEKQYGLGSK*
Ga0114880_12538763	3300008450	Freshwater Lake	ITDPKVLANAFIAGLIGPLLKAIQPSEKQLGVGAK*
Ga0114880_12684452	3300008450	Freshwater Lake	GRAALASVAALYLSGITDPKVLANAFIAGLIGPVVKALQPNEKQYGVGAK*
Ga0102829_11657571	3300009026	Estuarine	ASVAALYMSGITDYKVLANAFIAGLIGPLLKALQPSEKQLGVGAK*
Ga0102829_12747881	3300009026	Estuarine	ALSCVGALYLSGISDPKVLANAFLAGLIGPVLKAIAPNEKQLGVGAK*
Ga0114980_1002080810	3300009152	Freshwater Lake	YLSGITDPEILVNAFLAALLAPVMKALTPSEKEFGLKKK*
Ga0114977_101447005	3300009158	Freshwater Lake	YLRAALSCVGALYLSGISDPKVLANAFLAGLIGPLLKALAPNEKQLGIGAK*
Ga0114970_101632795	3300009163	Freshwater Lake	LYISGISDPKILANAFLAGLAGPLIKALQPSEKEFGIKK*
Ga0114969_104316772	3300009181	Freshwater Lake	WLRASAASALALYISGISDPKILANAFLAGLAGPLIKALQPNEKEFGIKK*
Ga0114969_104864653	3300009181	Freshwater Lake	LRAALSCVGALYLSGISDPKVLANAFLAGLIGPVLKAIAPNEKQLGIGAK*
Ga0114964_102794981	3300010157	Freshwater Lake	ALSAAGALYISGITDPKVLANAFIAGLVGPLLKALAPNEKQFGVRSK*
Ga0129333_106357811	3300010354	Freshwater To Marine Saline Gradient	YISGITDPKVLLNAFLAGIAAPLLKALQPNEKEFGITKK*
Ga0129333_106559924	3300010354	Freshwater To Marine Saline Gradient	LYISGMTDPKVLLNAFIAGLVGPIIKALQPNEKDYGVGSK*
Ga0129336_100349687	3300010370	Freshwater To Marine Saline Gradient	AMAQSWARASMASVVALYISGITDPKVLANAFLAGLLGPLAKALQPNEKEFGRNSK*
Ga0129336_105611143	3300010370	Freshwater To Marine Saline Gradient	AALYISGITDPKVLLNAFVAGLVGPLLKALQPNEKDFGLGSK*
Ga0129318_102602801	3300011009	Freshwater To Marine Saline Gradient	GITDPKVLANAFIAGLVGPLLKAMQPSEKQYGLGSK*
Ga0153805_10406073	3300012013	Surface Ice	ASLASAVALYISGITDPKVLLNAFLAGLLGPLVKALQPNQRDYGVNSK*
Ga0153805_10569943	3300012013	Surface Ice	LASVAALYLAGITDPKVLANAFIAGLIGPIVKALQPNEKQYGIGSKK*
Ga0153805_10865291	3300012013	Surface Ice	LYLAGITDPKVLANAFLAGLIGPVLKAIQPNEKQYGIGSKK*
Ga0157498_10416442	3300012666	Freshwater, Surface Ice	SGITDPKVLANAFLAGLAAPALKALQPNEKEFGVKSK*
Ga0164292_107014191	3300013005	Freshwater	MAGITDPKVLANAFVAALAGPLLKALQPNEKEFGIKK*
Ga0163200_12740471	3300013088	Freshwater	IRAAASCAGALYLSGITDPKTLANAFLAGLIGPAIKALTPSESAFGLGSK*
Ga0163199_11198865	3300013092	Freshwater	SGISDPKVLANAFIAGLVGPILKALQPSEKQFGLVKK*
(restricted) Ga0172374_10754314	3300013122	Freshwater	GITDPKVLANAFIAALIGPLLKAVQPNEKQFGIGAK*
Ga0177922_106767802	3300013372	Freshwater	ALYLSGITDPKILANAFIAGLIGPLVKALQPNEKQFGLGAK*
Ga0181350_10622984	3300017716	Freshwater Lake	GITDPKTLANAFIAGLIGPLMKALQPNEKQLGIGAK
Ga0181356_11121631	3300017761	Freshwater Lake	RAAISCVGALYLSGITDPKVLANAFIAGLLGPLIKALQPGEKSLGIGSK
Ga0181356_11566754	3300017761	Freshwater Lake	SVAALYLAGITDPKVLANAFIAGLIGPIVKALQPNEKQYGIGSKK
Ga0181356_12272763	3300017761	Freshwater Lake	LAGITDPKVLANAFLAGLIGPVLKAIQPNEKQYGIGSKK
Ga0181358_12783491	3300017774	Freshwater Lake	LYMSGITDPKVLANAFIAGLVGPLLKAIAPNEKQFGIGSK
Ga0181357_13386331	3300017777	Freshwater Lake	YLSGISDPKVLANAFIAGLLGPLIKALQPGEKSLGIGSK
Ga0181349_11684144	3300017778	Freshwater Lake	LSGITDPKVLVNAFIAGLIGPVLKAIAPNEKQLGIGAK
Ga0181346_11925023	3300017780	Freshwater Lake	ARASIAAVAALYMSGVTDPKVLANAFIAGLIGPLLKAVQPSEKQYGIGSK
Ga0181346_11996941	3300017780	Freshwater Lake	ALASVAALYISGITDPKVLANAFIAGLIGPLLKAVQPNEKQFGIGAK
Ga0181348_10640924	3300017784	Freshwater Lake	MSGITDPKVLANAFIAGLVGRLLKAIAPNKTQFGLGNKSTTNKGK
Ga0181355_13819561	3300017785	Freshwater Lake	LSCVGALYLSGISDPKVLANAFIAGLIGPLIKALQPGEKSLGIGSK
Ga0181355_13872281	3300017785	Freshwater Lake	YGRAALASVAALYISGITDPKVLANAFLAGLIGPLVKALQPNEKQFGVGSK
Ga0181359_10269611	3300019784	Freshwater Lake	VSGITDPKVLANAFIAGLIGPVLKAVAPNEKQLGIGAK
Ga0211733_111066551	3300020160	Freshwater	ALASAAALYMSGISDPKVLANAFIAGLVGPLLKALQPSEKQYGLGSK
Ga0211735_114272321	3300020162	Freshwater	ITDPKVLANAFIAGLIGPLLKALQPSEKEIGIGAK
Ga0211729_107264761	3300020172	Freshwater	VAQSWLRASAAAVLALYISGITDPKILANAFLAGLAAPALKALQPNEKEFGVKSK
Ga0211729_113877101	3300020172	Freshwater	ITDPKVLVNAFVAGLVGPLVKALQPSEKEFGITKK
Ga0208856_10159114	3300020548	Freshwater	LASVAALYMSGITDPKVLANAFIAGLVGPLLKAVQPSEKQYGIGSK
Ga0208723_10605931	3300020571	Freshwater	LSCVGALYLSGISDPKVLANAFLAGLIGPVLKAIAPNEKQLGIGAK
Ga0222713_100663551	3300021962	Estuarine Water	VAALYISGITDPKVLANAFIAGLLGPLVKALQPNEKQYGIGAE
Ga0222713_102726811	3300021962	Estuarine Water	LYMSGITDPKVLANAFIAGLIGPLLKAVQPNEKQFGIGAK
Ga0222712_106695133	3300021963	Estuarine Water	GRAALASVAALYISGITDPKVLANAFLAGLVGPLFKALQPNEKQFGVGSK
Ga0181354_11436334	3300022190	Freshwater Lake	LASVAALYLAGITDPKVLANAFIAGLIGPIVKALQPNEKQYGIGSKK
Ga0181354_12312973	3300022190	Freshwater Lake	YMSGISDPKVLANAFIAGLIGPVLKALDPKDSSIGLGSK
Ga0196905_10834881	3300022198	Aqueous	ALASVAALYISGITDPKVLANAFLAGLIGPFLKALQPSEKQFGIGAK
Ga0181351_11190904	3300022407	Freshwater Lake	ITDPKVLANAFIAGLIGPLLKAVAPNEKQFGIGAK
Ga0214919_105711714	3300023184	Freshwater	GALYISGISDPKILANAFIAAVIAPVLKALAPNEKQYGIGSK
Ga0214919_106765193	3300023184	Freshwater	RAAISCVGALYLSGISDPKVLANAFIAGLIGPVLKALAPNEKQLGIGSK
Ga0244775_105270381	3300024346	Estuarine	GITDPKVLANAFVAGLVGPLVKALQPNEKEFGIKK
Ga0256299_10701343	3300024533	Freshwater	YGRAALASVAALYLAGITDPKVLANAFLAGLIGPVLKAIQPNEKQYGIGSKK
Ga0209615_10055910	3300025075	Freshwater	ALASAAALYMSGITDPKVLANAFIAGLIGPLLKALQPSESQFGVKK
Ga0208643_10276131	3300025645	Aqueous	GITEPKVLANAFIAGLLGPLVKALQPNEKQYGIGAK
Ga0208800_10105031	3300027193	Estuarine	GALYLSGISDPKVLANAFIAGLIGPVLKAIAPTEKQFGVGAK
Ga0255086_10143751	3300027486	Freshwater	ITDPKVLANAFIAGLIGPIVKALQPNEKQYGIGSKK
Ga0255077_10337641	3300027529	Freshwater	LRAALSCVGALYLSGISDPKVLANAFLAGLIGPVLKAIAPNEKQLGIGAK
Ga0255075_100402910	3300027578	Freshwater	LYLSGITDPKILANAFLAGLIGPVLKAVAPNEKQLGIGSK
Ga0209651_10827853	3300027581	Freshwater Lake	SYLRASAAAAGALYMSGISDPKVLANAFVAGLVGPVCKALQPNEKEYGVGSGGGKSHQVA
Ga0208133_11414131	3300027631	Estuarine	YMSGISDPKVLANAFIAGLIGPLLKALQPSEGQFGVKK
Ga0209356_10352075	3300027644	Freshwater Lake	SGVTDPKTLANAFLAGLIGPLLRALNPSDKSFGVK
Ga0209357_10105399	3300027656	Freshwater Lake	YLSGITDPKVLANAFIAGLIGPLLKAVAPNEKQFGIGAK
Ga0208975_100802810	3300027659	Freshwater Lentic	AISCVGALYLSGITDPKTLANAFIAGLVGPLLKALSPSEKQFGVGAN
Ga0208975_11739451	3300027659	Freshwater Lentic	LYMSGITDPKVLANAFIAGLVGPLLKAIAPNEKQFGVGAK
Ga0209553_11334221	3300027688	Freshwater Lake	LYLAGITDPKVLANAFLAGLIGPVLKAIQPNEKQYGIGSKK
Ga0209033_10461944	3300027697	Freshwater Lake	LASVAALYISGITDPKVLANAFLAGLIGPLVKALQPNEKQYGIGAK
Ga0209442_12799592	3300027732	Freshwater Lake	ALYMSGISDPKVLANAFVAGLVGPVCKALQPNEKEYGVGSGGGKSHQVA
Ga0209107_103844041	3300027797	Freshwater And Sediment	RSAVACAAALYMSGITDPKVLANAFIAGLIGPLLKAVQPSEGQFGVTK
Ga0209354_100295978	3300027808	Freshwater Lake	YLSGISDPKILANAFVAGLIGPLLKAITPSDKSFGLGAK
Ga0209354_102025891	3300027808	Freshwater Lake	LYLSGITDPKTLANAFIAGLLGPLIKALQPGEKQYGIGSK
Ga0209400_12219591	3300027963	Freshwater Lake	AIYMSGISEPKILANAFIAGLLGPLLKALAPNEKQIGIGSK
Ga0247723_11416741	3300028025	Deep Subsurface Sediment	SGITDPKTLANAFIAGLVGPILKALAPSEKQFGVGAN
Ga0315909_102352541	3300031857	Freshwater	YGRAALASVAALYLSGITDPKILANAFIAGLIGPLVKAVQPNEKQYGIGAK
Ga0315904_114525841	3300031951	Freshwater	VAALYMSGITDPKVLANAFIAGLIGPLLKALQPSEGELGIKK
Ga0315901_101057991	3300031963	Freshwater	SGITDPKVLANAFIAGLIGPLLKAMQPSEKQLGVGAK
Ga0315274_111137684	3300031999	Sediment	YLSGISDPKVLANAFIAGLVGPILKALQPSEKQFGLVKK
Ga0334981_0460248_2_139	3300033980	Freshwater	LASAAALYMSGITDPKVLANAFIAGLIGPLLKALQPSEGQFGVTK
Ga0334979_0148336_33_149	3300033996	Freshwater	MSGISDPKVLANAFIAGLIGPLLKALQPSEKQLGVGAK
Ga0334979_0521278_533_640	3300033996	Freshwater	ITDPKVLANAFIAGLVGPLLKALQPSEKQYGLGSK
Ga0335002_0620192_423_557	3300034020	Freshwater	CVGALYLSGITDPKVLANAFLAGLIGPVLKAIAPNEKQLGIGAK
Ga0335004_0459772_571_705	3300034021	Freshwater	CVGALYLSGITDPKVLANAFLAGLIGPVLKALAPNEKQLGIGAK
Ga0335004_0716734_45_167	3300034021	Freshwater	LYLAGITDPKVLANAFIAAFIGPVLKAVQPNEKQYGIGAK
Ga0335024_0602516_409_525	3300034051	Freshwater	LSGISDPKVLANAFLAGLIGPVLKAIAPNEKQLGVGAK
Ga0334987_0547032_63_179	3300034061	Freshwater	MSGITDPKVLANAFIAGLVGPLLKAVQPSEKQYGLGSK
Ga0334987_0760766_2_109	3300034061	Freshwater	SGVTDPKTLANAFIAGLIGPLLRGLNHSDKTFGIK
Ga0334995_0518546_543_659	3300034062	Freshwater	MSGITDPKVLANAFIAGLVGPLLKAVQPSEKQYGIGSK
Ga0335001_0558412_306_437	3300034064	Freshwater	VGALYLSGITDPKVLANAFLAGLIGPVLKAIAPNEKQLGIGAK
Ga0335019_0716669_439_573	3300034066	Freshwater	SAAALYMSGITDPKVLANAFIAGLVGPLLKAVQPSEKQYGLGAK
Ga0335028_0710197_45_164	3300034071	Freshwater	MYMAGITDPKVLANAFVAALAGPLLKALQPNEKEFGIKK
Ga0335027_0030338_4389_4517	3300034101	Freshwater	GALYLSGISDPKVLANAFLAGLIGPVLKAIAPNEKQLGIGAK
Ga0335027_0325318_3_152	3300034101	Freshwater	RAALACVGALYLSGITDPKVLANAFLAGLIGPVLKAVAPNEKQLGIGAK
Ga0335029_0508995_2_121	3300034102	Freshwater	YLSGILDPKVLANAFLAGLIGPLLKAIQPSEKQLGVGAK
Ga0335030_0470305_3_122	3300034103	Freshwater	YISGITDPKILLNAFLAGIAAPLLKALQPNEKDYGIGSK
Ga0335036_0427206_697_843	3300034106	Freshwater	AALASVAALYMSGIQDPKVLANAFIAGLVGPLMKAVQPNEKQYGIGSK
Ga0335036_0855996_2_139	3300034106	Freshwater	ASVAALYMSGIQDPKVLANAFIAGLVGPLMKAIQPNEKQYGIGSK
Ga0335050_0330104_575_712	3300034108	Freshwater	ACVGALYLSGITDPKVLANAFLAGLIGPVLKAIAPNEKQLGIGAK
Ga0335068_0587867_384_500	3300034116	Freshwater	MAGITDPKVLANAFLAALAGPLLKALQPNEKEFGITKK
Ga0335053_0456364_8_175	3300034118	Freshwater	MAQSWARASASAVLALYISGITDPKVLANAFLAGLAAPALKALQSNEKEFGRNSK
Ga0335054_0574393_490_621	3300034119	Freshwater	VLALYISGITDPKILLNAFLAGIAAPLLKALQPNEKDYGIGSN
Ga0335056_0339699_674_790	3300034120	Freshwater	MSGITDPKILANAFIAGLVGPLLKAVQPSEKQYGLGSK
Ga0335056_0658823_3_143	3300034120	Freshwater	LACVGALYLSGITDPKVLANAFLAGLIGPVLKAIAPNEKQLGIGAK
Ga0335060_0492526_14_130	3300034122	Freshwater	MSGITDPKVLANAFIAGLIGPLLKALQPSEKQYGLGSK
Ga0335049_0066393_2551_2658	3300034272	Freshwater	ITDPKVLANAFLAGLLGPLAKALQPNEKEFGRNSK
Ga0335007_0678430_2_157	3300034283	Freshwater	YLRAALSCVGALYLSGITDPKVLANAFLAGLIGPVLKAIAPNEKQLGIGAK
Ga0335048_0169699_21_137	3300034356	Freshwater	MSGITDPKVLANAFIAGLIGPLVKAVQPNEKQYGIGAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters