Scaffold Ga0335027

Basic Information
Taxon OID	3300034101 Open in IMG/M
Scaffold ID	Ga0335027_0022271 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034101 Open in IMG/M

Scaffold ID

Ga0335027_0022271 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5361
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (64.29%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5361

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (64.29%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F009064	Metagenome / Metatranscriptome	323	Y
F011077	Metagenome / Metatranscriptome	295	Y
F017788	Metagenome / Metatranscriptome	238	Y
F037701	Metagenome / Metatranscriptome	167	Y
F098668	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0022271_1620_1799	F098668	AGGA	MMKNISNLIAASGCFNLDEALRAVAELHIPEGTLVHRCQEDKKPWPCQTIKIIERELTK
Ga0335027_0022271_1796_1954	F011077	GAG	MITDNLTWAEEENNVWKGWTYSLEKNRYYFDDVGNESLAAFWADDFLNQAYS
Ga0335027_0022271_1967_2113	F037701	AGGA	MIKSKEWRISNRVWLGVGFAPRRIALGFSVDRFNANIDFLWFWISLEY
Ga0335027_0022271_3058_3456	F017788	AGGA	MKKIIITFLLISLLIPTASAQAATKSLNTKGNKVSCKSIKTKYKSEIMSKWSNGLASDQDVLKEIDLNIDMLAAKQKFTTGKIKTTITSWITAEKNTKIALTSKNVEAITVAMNLKISSITNFDKLCKSIEK
Ga0335027_0022271_3700_3921	F004475	GAGG	MTNWTEELNDKQKEDVWNFVVFTVKEIREQIARDIEATIPLWKSKGLLKSRRTQKAFEASAAIARGQNEQING
Ga0335027_0022271_689_1168	F009064	GAG	VIVKLTPEEVRVCTMLGMERWLTKFGSEDRPNYAKGKADGLLEHELLANVRANVCEWAVAKQYNVSWNVPWYPNSLHPMRKGLADLSKNIEVRSVRTQTSIPFWEKDKDNYIFGAKVLDTEYYSKVEVYGHIKASDFMTKKYYDTYISGWRVPIGEFSE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335027_0022271

Overview

Ecosystem & Geography

Associated Families

Sequences