Scaffold Ga0335027_0021656

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0021656
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5446
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (86.36%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003961	Metagenome / Metatranscriptome	459	Y
F006842	Metagenome	363	Y
F017469	Metagenome / Metatranscriptome	240	Y
F018703	Metagenome	233	Y
F072283	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0021656_1032_1166	F017469	GGAGG	MKDICQFCGWEITKPEWYNEYQGSYACDNCLMDSATERERESAV
Ga0335027_0021656_1309_1446	F006842	GGAG	MSYTPAICGDHLVPISECNCFSYMREIASAAERLIQLTKEREEMK
Ga0335027_0021656_1939_2079	F072283	N/A	MQDLIDLIKPILPNALVIDTDEGILIETGLELGLGGLLQPIEGENK
Ga0335027_0021656_35_268	F018703	N/A	MAVMRKREKQRIEAAKQKAVNYRNYRRVRDRALAKLSREYPEAYRAFYEEELKADENMGKKWLDIAGNTKPRNFRRG
Ga0335027_0021656_5132_5446	F003961	N/A	VELSTGTSTGGLMAENSADIAKRIILNCVAEAFTIEQACASAGKSMKTYEYYRRTDKVFADKIDRTRLGLKDKQFASGDAHDLSFADFRQRFLHNSTFPHQQNLV