Scaffold Ga0335027_0021224

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0021224
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5509
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012869	Metagenome / Metatranscriptome	276	Y
F058938	Metagenome	134	Y
F099169	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0021224_1784_2056	F012869	GGAG	MIAIHTKYISPTNTRGARVKAYTAAWGDRKGFEVTIPYPYELSGEQVHFAAVKALIKKHDLNWNLEGMRYGDSADGRGFSFCFDHSKVTQ
Ga0335027_0021224_29_250	F099169	N/A	MYFDGGTEMNPTIAEALAPFRPLTYTEHYYIDLGYRHELGKAEEYEYKQAHAEGPEARRLMNRGALEAMQRAY
Ga0335027_0021224_650_865	F058938	AGGA	MTHYDRTKITFHRGNAFTPEGIDAEPFATFTIDDLVDHKLIEAICALVRAHVNDAHKDFCNIKLSTEDWDS