Scaffold Ga0335027_0012117

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0012117
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7446
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006743	Metagenome / Metatranscriptome	365	Y
F020863	Metagenome	221	Y
F037190	Metagenome / Metatranscriptome	168	Y
F079999	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0012117_2079_2375	F006743	GGAGG	MRTENWQRNTRGLRLVGEGESGSASTFFGPVRAGLTTSQATSKEAQLSELLSSLEREVENLRSKYCEAYVTLICVTEHLVRLNALLLNTDTTKEGEGV
Ga0335027_0012117_4180_4317	F079999	GGAG	MRDIFELSFRWQDGFIQVLIYALVIYLGLVIISKITDKREREGKR
Ga0335027_0012117_4550_4867	F020863	N/A	MEDLRRLVGVLEELVRPLLEGEEVEDTYESNKRPHLVLQEGSKTYGRAFRVHFSGGSKYGSGHWEPRGFSDYLGGTKAEAERTLRSLIAGIRTGQMISEKEGANK
Ga0335027_0012117_5877_6029	F037190	AGGA	MDRYLLIELGSEGLAFETAQFDFYASWLGIGLTFAVIVAVKIAKRYRKGA