Scaffold Ga0335027_0011763

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0011763
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7566
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003658	Metagenome	474	Y
F005558	Metagenome	396	Y
F072283	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0011763_3140_3283	F072283	AGGAG	MQDLINAIKPILPNALIIDTDEGIMIETNLELGIGGLLQPMETEGEE
Ga0335027_0011763_5321_5461	F005558	AGGAGG	MLNDSISWGELAQLTHATQVERFNWCWCEEQEQFPYDDCPKVKANA
Ga0335027_0011763_6662_6838	F003658	N/A	MLDLTGKPIMVCICGSKLWQVNVMWDAEERSVSWYDLRQTCVVCGAIATAPTPIDEEI