Scaffold Ga0335027_0005386

Overview

Basic Information

• Taxon OID: 3300034101
• Scaffold ID: Ga0335027_0005386
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11251
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (88.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F080044	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0005386_1765_1959	F080044	GGAG	MPNLNEFLNSKIKEEPKGYELEKLAGVRACSKCDEDVSGASWDPIKLVMSWICSKNHETVFRIQ
Ga0335027_0005386_6749_7285	F000369	AGAAG	MSELELVDHYDRMNKVVAELLKGNSPTQIATLTGLKRAEVVELIDEWKSVVHNDSTAKERAKEAISGADKHYAMLIKEAWKTVEDADQQGQLNVKSTALKLIADIEGKRIGMLQEIGLLDNAELATQISETERKQDILVKILKEVTAGCPKCKMDVAKRLSQITGIVEPITIEEASGV