NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0003316

Scaffold Ga0335027_0003316


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0003316 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14172
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007222Metagenome / Metatranscriptome355Y
F015073Metagenome / Metatranscriptome257Y
F055557Metagenome / Metatranscriptome138N
F085385Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0003316_11563_11715F085385GGAGMYAFQEVAMWMLFGVFTGFMAGYAIGRKEGKREGFIRGRIAANRKAEYRD
Ga0335027_0003316_11715_12326F015073GGAGMGFLDNYETVNQKVIRLHATYPTNRIETSIIDWNSEKGYILIECRIYRNYEDEKPAAIDYAHGMVGAYNPQMKRWYVEDTVSSAIGRCASVVLGTETKPSLESMQQVETMPKAFIEEDLWSKPFGEDGFATAQSAMNEIQTKLGGELIPEAPICAHGHMILKEGISPKTNKPYRGHVCVEKVKANQCSPIWYEVTSNGNWSAK
Ga0335027_0003316_12514_13026F055557N/AMQMKLKITHEDEWTAAKVAIERVEEIEGKPDHISRYNKSLSFHDYICEIAESVGAEIAVAKYFGIRDFNPRASRFKRTADVGSIIEVKWTKYDSGSLIIYDSDRNTDIAILVTGKSPNYVLKGWIPVTIAKNQKWRRRDQPTYWVEQYNLHPIENLRRSSHGEATLPMSG
Ga0335027_0003316_6066_6605F007222GGAGMANEAKQGRFEITVDPVEFRNLIGLLNALDKDTQNEIRSKALPLSQRLAGQLLMFSQSAPSPQAKLVAQSIAAKRDRLIRVDIGGTKHVGRKYGGEQSKSGKGKKVRQQSAPAGALLWGSEFGSHRGVDSAGRAYTNRFKAAYNKRGYWMTPAVDYYTPIVAREYAQMVQDVVKKLRLD
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