NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335027_0002783

Scaffold Ga0335027_0002783


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0002783 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15306
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (82.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007222Metagenome / Metatranscriptome355Y
F015073Metagenome / Metatranscriptome257Y
F055557Metagenome / Metatranscriptome138N
F085385Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0002783_1630_2136F055557GGAGMKMKIAHDDEWMAAKVAIERVEEIEGKPDHVSRYNKNLSFHDYICEIAESVGAEIAVAKYFGIKDFNPRASRFKRTADVGSIIEVKWTKYDAGSLIIYDSDRSTDIAILVTGKSPNYVLKGWIPVAIAKNQKWRRRDQPTYWVEQYNLHPIENLRRSSHGEATLPMSG
Ga0335027_0002783_2333_2947F015073GAGVGFLDGYETVNQKVIRLHATYPTNRIETSIVDWQPEKGYILIECRIYRNYEDEKPAAIDYAHGMVGAYNVQMKRWYVEDTVSSAIGRCASVVLGTETKPSLESMQQVETMPKAFVEDDPWSKPFGEDGFATAKSAMDEIQTKLGGELIAEAPICAHGHMVLKEGVSPKTNKAYRGHVCTEKVKANQCSPIWYEVTPTGGWKARS
Ga0335027_0002783_2947_3096F085385GGAGMYALQEVAAWMLFGVLAGFTSGYALGLKEGKREGFIRGRIAGRKNAEIR
Ga0335027_0002783_8707_9240F007222GGAGMASKQGTFAIQVEPAALRNLIQTLNLLDKETQNKVRDAAYPLSQRLAGQLFMFSQSAPSPQTKLVAQSITAKRDRLIRVDVGGSKKVGRKYGGEQSKSGKGAKVRQQSAPAGALLWGTEYGSGKGTDSLGRAYSNRFKAARNKRGYWINPAVDYYTPIVAKEYIDIIQTIIRKVGLD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.