Scaffold Ga0335025_0005411

Overview

Basic Information

• Taxon OID: 3300034096
• Scaffold ID: Ga0335025_0005411
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9573
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024717	Metagenome	204	Y
F034061	Metagenome	175	N
F060610	Metagenome	132	Y
F065376	Metagenome	127	Y
F079784	Metagenome	115	N
F085061	Metagenome	111	Y
F100269	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335025_0005411_1088_1549	F024717	N/A	MATPKEISGRIDALFSEWSGGFTPLSFAVQDMRREMYIRIFGIDTGRGRNQAGNFLPTKPYTKAYAKIKAANGKPPLELTGFLKRSFATDQTTVVTEGFDTAIYTVADEAGKVAGLEKLYGTIFKPTAEEQARMLQLHADLLVEQISNEISKP
Ga0335025_0005411_42_1088	F034061	N/A	MCYESLLGLQGCDRPEPTTGLYIDDLGINQTLLGQLITDQYNSGVELFEAKRAFAWRKMSTDILSRLTPMMKADTVVESKRIGQVVSNAANIDVALGANKYAGIRVTIDPNTESFLNFYLSNFKIDIYTMATPVEIFVYDMSTLKLIDSFFYQSEAVEQFIGKTFKANRRKLDLAFVYESLYDTTKMIPKKGHCFDCSGNVRGAHICPFVDAVGIELTVSGDDVISSKSKKYTQGMSLVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYNYGLSVSPNQRVNTTVSINIGSKPFATADANDGMIAGRDIAATRYNEELTAMLQNMRLPSDNTCFDCRRNMKYVTALP
Ga0335025_0005411_5486_5686	F079784	N/A	MARKPVSKPRQVLDIVLKYWRPTIGSLVILGSVFALIFKQINTETLAAIVAAMVAAGYIPKSSDNG
Ga0335025_0005411_5679_6161	F060610	N/A	MDDGIDTVQITTSLDAACVIGIGCKLHTHHHVIHLEPQVVYQSMQKFTIFGKHYCTNQWGQTYELPSDKPIPEPTTMQQIYASDTIKPSTSAFLLAPKPEAKIIIKPRAEFREYQPTMDAPVMGLLLTFTIYLTAQWAWSSMPAWSNLYSELKQCLRYSS
Ga0335025_0005411_6866_7513	F100269	N/A	MASVRIETFILGVVILLVFLLIKSCSDNVQSDYRLKHTIYEDSILIASQKKIIALKNSDAAKQAQQIAELEVKVKNASEVVRIETRTVIKTQIKLGDTVMIDKKPYIQLPKPFLKTTEWYTIGGMINRLGWLQIDSLVIPAKFTYAVGDTMRTGFFNRLFRKSDQVVRMRVDNPNVAITGMDNIYIKEDKKWHQTTAFKLGVGAIIGFGLGVSRK
Ga0335025_0005411_8651_9307	F065376	N/A	MNAANIENISEFYKSLNSTEVLRAQGMIEGAPQVIEDKLSYDMSAESIKAANDAIKHIENNRKMVTIPLDQYKKSIMDVEREHIAPLKAYIEQRKAMMIDYSNELERKKAEADAKIAQQAADALMSASSSDVSDIFANFTDATTTTTLELDHTKNIRITKKAEIVGEVDWMTLLWTLMQAEMFDVAELLRKLPKAMEITNIAEIKGIEIVEHKTQAIR
Ga0335025_0005411_9304_9540	F085061	N/A	MSPFDNIHYEFTQFNRYLDTIIDPRECDNDTMEAKVKEAIIQAYSNGYHDGQQDMFKRLPKPTSQGGEEGGREYYDSL