NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335025_0001594

Scaffold Ga0335025_0001594


Overview

Basic Information
Taxon OID3300034096 Open in IMG/M
Scaffold IDGa0335025_0001594 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17744
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083632Metagenome112N
F102622Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0335025_0001594_13141_13284F102622AGGAGGMKRRWNAALQSLVLVRMGQELGTDSDLAQAVAHSIEFVLGTLARFFS
Ga0335025_0001594_394_738F083632GGAGGMSLEDLDAYVWSKLSARKHMAGKALVSRLANRVVRKWPHVAMSQTRPEQYAVVTDEIARSIERSERQNYQMGIILTLVLGVLIQEIVKAVLRWWLESASNRIQLLGWQTEMRKR

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