Scaffold Ga0335025_0000445

Overview

Basic Information

• Taxon OID: 3300034096
• Scaffold ID: Ga0335025_0000445
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32206
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (72.73%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029419	Metagenome / Metatranscriptome	188	Y
F035302	Metagenome	172	Y
F036680	Metagenome	169	Y
F039535	Metagenome / Metatranscriptome	163	Y
F074589	Metagenome / Metatranscriptome	119	N
F081323	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335025_0000445_13704_14012	F036680	AGGAG	MKITKHSLDHIELIASGDTALFEVRLIVAMHDWSDDEADAGFDEIGALGWLMNLLHLAAQGEDIKTGAEEFLKSMMTLNEERVHLCKVEKINYNIDEIGETK
Ga0335025_0000445_14973_15614	F039535	N/A	MLGLRHTPTEANDERLRHELSRTDQRKLETYNQVQKEDKVNGVNVKKIVALFVASCIGWVGIADAAEAPQQVDRVQMRQHPFDYVLEKKRTVPAWAKCPEIWNRLRDAGWLEKDVVKADQIVWRESRCIATAHNKNDPNTVQGVKGSLGLFQINLFWIQRTTYYPNGYLQTVLNRDLVPADLFDVSTTIDAAQALIAYDRGLGRCGWSAWLGC
Ga0335025_0000445_15841_16242	F074589	AGGAGG	MTPAQIEGFIDRICGLFPTSQIGRNTVKNAWTADDLLLLQDVDDARKVVPLIMEHHDKFPSLKEVHKAFALLRKPATDQTIIVCEICDGNGWDNGRRWNYNAKELICEGFTKTVLGRSYTYVVPCKCREFSKA
Ga0335025_0000445_16663_17163	F029419	N/A	MMIEDRKGECQGNRDKCNLKDCPKFGTLGRPSRDGSRRVKGCADPTARGKRSRTKGLSKQRVARKRLGVAPSNKFGDGNEEMWQDVLFANEVKAGKQIGAAVTAWLRIEAQVRSNEADYGSRRKPTRAILMPDDWGSEGLVMIRLSVWEELVRPAMHEYYEGGASE
Ga0335025_0000445_23511_24005	F035302	N/A	MKRSYTGNKDGLAQGERKGLTVFIKQLCALYPAIWNNGSYVNRPMRGKKDLSVHATGRAVDLSYRFMAKEKRGIAEGGRKQAMEAMDFLVKNADAFGLEAILDYFPMPHGRGWRCDRSSWTIYNTKTITGAPMGDWFHAEISPAMADNPDAMREAFANAVKPVA
Ga0335025_0000445_2570_2740	F081323	AGGA	MPNYKVMTDRCALGKQGATISGDDLEGFNLDALVEGGHLAEVNVKVPKQDTKETDK