NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326723_0045121

Scaffold Ga0326723_0045121


Overview

Basic Information
Taxon OID3300034090 Open in IMG/M
Scaffold IDGa0326723_0045121 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1857
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.3286Long. (o)-76.4792Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002616Metagenome / Metatranscriptome543Y
F084799Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0326723_0045121_1_162F084799GGAMPRYYFHLTDGNQVLNNHKGIDLSGNAAARADAVAFARDLKNGAVMPGWNWTGW
Ga0326723_0045121_1638_1817F002616GGAGGMSNSFLNWTSRVAIAARVAEERHSESCNELTIPGDYHMPFGKAAAQTKAAKWLWQVYVI
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