Metagenome / Metatranscriptome Family F084799

Overview

Basic Information

• Family ID: F084799
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 112
• Average Sequence Length: 49 residues
• Representative Sequence: MPRYYFHLTDGKQVLNNHKGIDLSGNAAARDDALALARDLKHGAVMPGW
• Number of Associated Samples: 100
• Number of Associated Scaffolds: 112

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 97.32 %
• % of genes near scaffold ends (potentially truncated): 95.54 %
• % of genes from short scaffolds (< 2000 bps): 88.39 %
• Associated GOLD sequencing projects: 96
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (77.679 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (13.393 % of family members)
• Environment Ontology (ENVO): Unclassified (23.214 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (43.750 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 19.48%
  β-sheet: 2.60%
  Coil/Unstructured: 77.92%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01293	PEPCK_ATP	5.36
PF04140	ICMT	3.57
PF13649	Methyltransf_25	3.57
PF00582	Usp	1.79
PF11158	DUF2938	1.79
PF05362	Lon_C	1.79
PF00011	HSP20	1.79
PF13467	RHH_4	1.79
PF02190	LON_substr_bdg	1.79
PF05164	ZapA	1.79

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1866	Phosphoenolpyruvate carboxykinase, ATP-dependent	Energy production and conversion [C]	5.36
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	1.79
COG0466	ATP-dependent Lon protease, bacterial type	Posttranslational modification, protein turnover, chaperones [O]	1.79
COG1067	Predicted ATP-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	1.79
COG1750	Predicted archaeal serine protease, S18 family	General function prediction only [R]	1.79
COG3480	Predicted secreted protein YlbL, contains PDZ domain	Signal transduction mechanisms [T]	1.79
COG3027	Cell division protein ZapA, inhibits GTPase activity of FtsZ	Cell cycle control, cell division, chromosome partitioning [D]	1.79
COG4934	Serine protease, subtilase family	Posttranslational modification, protein turnover, chaperones [O]	0.89
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.89
COG4782	Esterase/lipase superfamily enzyme	General function prediction only [R]	0.89

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.68 %
Unclassified	root	N/A	22.32 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.68 %
Unclassified	root	N/A	22.32 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.68 %
Unclassified	root	N/A	22.32 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	65.18 %
Unclassified	root	N/A	22.32 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	61.61 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.89 %
Unclassified	root	N/A	22.32 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.89 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	31.25 %
Unclassified	root	N/A	22.32 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	4.46 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.46 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	10.71 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.89 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.89 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.89 %
Unclassified	root	N/A	22.32 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.46 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.46 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.89 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.89 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.89 %
Unclassified	root	N/A	22.32 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.46 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.46 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.89 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.89 %
Unclassified	root	N/A	22.32 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	0.89 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.89 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.46 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.46 %
Methylobacterium sp. WSM2598	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. WSM2598	0.89 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.89 %
Rhizobium mesoamericanum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mesoamericanum	0.89 %
Unclassified	root	N/A	22.32 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000955|JGI1027J12803_107046217	All Organisms → cellular organisms → Bacteria	697
3300001396|JGI20175J14863_1023567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	779
3300004058|Ga0055498_10110488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mesoamericanum	566
3300004635|Ga0062388_102476633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	544
3300005164|Ga0066815_10017463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	969
3300005205|Ga0068999_10142343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	504
3300005332|Ga0066388_103350525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	819
3300005332|Ga0066388_104516412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. WSM2598	709
3300005338|Ga0068868_101047659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	748
3300005542|Ga0070732_10731322	Not Available	603

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.71%
Host-Associated	Host-Associated	14.29%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	8.93%
Arthropoda	Host-Associated → Arthropoda	0.89%
Fungi	Host-Associated → Fungi	0.89%
Plants	Host-Associated → Plants	12.50%
Terrestrial	Environmental → Terrestrial	76.79%

Category

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Arthropoda → Digestive System	0.89%
Freshwater	Environmental → Aquatic → Freshwater	2.68%
Marine	Environmental → Aquatic → Marine	1.79%
Mycelium	Host-Associated → Fungi → Mycelium	0.89%
Peat	Environmental → Terrestrial → Peat	1.79%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.93%
Roots	Host-Associated → Plants → Roots	0.89%
Sediment	Environmental → Aquatic → Sediment	4.46%
Soil	Environmental → Terrestrial → Soil	75.00%

Type

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.79%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.89%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.89%
Loam	Environmental → Terrestrial → Soil → Loam	11.61%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.68%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.25%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.46%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.50%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.79%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.79%

Subtype

Habitat	Taxonomy	Distribution
Acid Mine Drainage	Environmental → Aquatic → Freshwater → Groundwater → Acid Mine Drainage	0.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.57%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.04%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.68%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.25%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.89%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.89%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.89%

Habitat

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.79%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.89%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.57%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.79%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.79%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.79%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.89%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.46%
Sediment	Environmental → Aquatic → Freshwater → Groundwater → Acid Mine Drainage → Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.04%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	7.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.04%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.25%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.68%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.79%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300001396	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012	Environmental
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental
3300005205	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1070462172	3300000955	Soil	MPRYYFCLTDGKQVLNNHKGIDLSGNAAAREDALVLARDLKHGAVMPGWDWSGW
JGI20175J14863_10235672	3300001396	Arctic Peat Soil	MPRYYFHLTDGKQVLNNHKGIDLSGNAAARADAVALARDLKHGAAMPGWNWTGWFIVIV
Ga0055498_101104881	3300004058	Natural And Restored Wetlands	MPRYYFHLTDGKQVLNNHKGIDLSGNAVAREDALALARDLKHGAVMP
Ga0062388_1024766331	3300004635	Bog Forest Soil	MPRYFFRLTNGKRVLDNHQGIDLPGDAAALTDALTLARDLKHGATMPGWDWT
Ga0066815_100174631	3300005164	Soil	MPRYYFHLTDGNQVLNNHKGIDLSGDAAARDDAMTLARDLKHGAVMRGWNW
Ga0068999_101423431	3300005205	Natural And Restored Wetlands	MPRYYFHLTDGNQVLNNHKGIDLSGNATARTDALALARDLKNGA
Ga0066388_1033505252	3300005332	Tropical Forest Soil	MPLYFFQLTDGEQVLDNHQGLDLPGDAAARDDALALARDLKHG
Ga0066388_1045164121	3300005332	Tropical Forest Soil	MPLYYFHLTDGEQVLDNHQGLDLPGEAAARDDALALARDLKHGNVMPGWDW
Ga0068868_1010476592	3300005338	Miscanthus Rhizosphere	MPRYYFRLTDGNQILNNHKGVDLAGDAAALEDALALARDLKHGPVMQGWDWAGWFVKIVD
Ga0070732_107313221	3300005542	Surface Soil	MPRYYFHLTDGKSVLNNHQGLELAGNAAARADAVALADDLRRGVKMAGWKWDG
Ga0066903_1003569293	3300005764	Tropical Forest Soil	MPRYFFHLTDGKKILNNHKGIDLSGNAAAREDALALAR
Ga0070715_100913754	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MARYYFHLTDGKQVLTTHKGVDLPGNAAAREEALRFAGELKHGKKV
Ga0070712_1001357431	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MPRYYFHLTDGDQVLTNHKGVDLPGSAAARADAVVFARDLKGGAV
Ga0070712_1013477811	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MPRYYFQLTDGKQVLNNHQGVDLAGNAAARDDAVVLARDLKHGNAMPGWNWTGWFVAI
Ga0075367_101854941	3300006178	Populus Endosphere	MPRYFFHLTDGKETVNNPEGMDLPGTAAAREEAMVLARDLKHGKVMP
Ga0075521_106630332	3300006642	Arctic Peat Soil	MPRYYFHLTDGKQVLNNHKGIDLSGNAAARADAVALARDL
Ga0075425_1003904044	3300006854	Populus Rhizosphere	MPRYYFQLTDGKQVLNNHQGVDLAGNAAARDDAVVLARDLKHGNAM
Ga0075424_1000992641	3300006904	Populus Rhizosphere	MPRYYFHLTDGKQVLNNHKGIDLSGNAAAREDALALARDLKHGAVMPGWNWTGWFVVI
Ga0111539_100261189	3300009094	Populus Rhizosphere	MPRYYFHLTDGKQVLDNHKGIDLPGNAAARTDAVALARDLKHGAVMPGWN*
Ga0111539_107459073	3300009094	Populus Rhizosphere	MPRYFFHLSDGKQVLNNHKGIDLSGNAAARENALVLARDLKHGAV
Ga0114129_104142421	3300009147	Populus Rhizosphere	MPRYYFHLTDGKQVLNNHKGIDLSGNAAAREDALTLARDLKHGAVMPGWNWTG
Ga0123356_119874752	3300010049	Termite Gut	MPRYYFLLTDGEQVLNNHKGIDLAGDAAARTDAVALARDLKHGTVMPNWDW
Ga0126376_100774053	3300010359	Tropical Forest Soil	MPRYYFHLTDGKQVLNNHKGVDLPANAAARDDAVVLARDL
Ga0126376_118093731	3300010359	Tropical Forest Soil	MPRYYFHLSDGKQVLNNHKGIDLSGNAAAREDALVLARNLKHGAAMPGWDWSGWF
Ga0126372_112455532	3300010360	Tropical Forest Soil	MPLYYFRLTDGEQVLDNHQGLDLAGEAAAREDALALARDLKHG
Ga0126381_1021750412	3300010376	Tropical Forest Soil	MPRYYFHLTDGKQVLNNHKGVDLAGNAAARANAVVLARDLNHGAVMPGW
Ga0126383_105160221	3300010398	Tropical Forest Soil	MPRYYFHLSDGKKVLSNHKGIDLSGNAAAREDALVLARDLKHGAVMPGWDWSG
Ga0126383_105988452	3300010398	Tropical Forest Soil	MPRYYFRLTDGEQVLDNHQGLDLAGEAAAREDALALARDLKRGNVMPGWDWDGWFINI
Ga0151623_11303272	3300011264	Sediment	MRDNAMPRYYFHLTDGKQVLNNHQGIDLPGNAAARADAVALAGNLTSGAV
Ga0153921_10999811	3300012080	Attine Ant Fungus Gardens	MPRYYFHLTDGKNVLSNHQGIDLAGDAAAHADAVALAD
Ga0137374_107072531	3300012204	Vadose Zone Soil	MRYYFHLTDGKEVVKQPNGVELPGRAAAREDALVLARDLREGKVFPGRKWDDW
Ga0137381_108732142	3300012207	Vadose Zone Soil	MPRYFFHLTDGKQVVKSHKPEGLELPGNAAARAEALMLARDLKHGRLMPE
Ga0137394_109712582	3300012922	Vadose Zone Soil	MPRYFFHLTDGKRVEKGDRPQGIELAGNATAREEALMLARDLKHGKLMPGRKW
Ga0153915_110631211	3300012931	Freshwater Wetlands	MPRYYFHLTDGRNLLNNHQGVDLPGNAAARADAMILA
Ga0164298_104748801	3300012955	Soil	MPRYYFHLSDGDQVLTNHKGIDLPGNAAARADAVVL
Ga0164308_110269362	3300012985	Soil	MPRYFFHLTDGKQVLNNHKGIDLSGNAAAREDAMAFARDL
Ga0120127_100233221	3300013503	Permafrost	MPRFYFHLTDGKQVLSNHKGVDLSGNAAARDDAVVLARDLKHGEAMPGWDW
Ga0075354_10122881	3300014308	Natural And Restored Wetlands	MPRYYFHLTDGKQVLNNHKGIDLSGNAVAREDALA
Ga0075352_12664181	3300014324	Natural And Restored Wetlands	MPRYYFHLTDGKQVLNNHKGIDLSGNAVAREDALALARDLKHGAVMPGWNW
Ga0182024_117545521	3300014501	Permafrost	MPRYYFHLTDGKNILSNHQGIDLAGDAAAHADALALADDLRRGVKMPGGKWDGW
Ga0132256_1012052591	3300015372	Arabidopsis Rhizosphere	MPRYYFHLTDGNKVLNNHKGIDLSGNAAARDDAMALARDL
Ga0132257_1046281161	3300015373	Arabidopsis Rhizosphere	MPRYYFHLTDGDQVLTNHKGVDLPGNAAARADAVV
Ga0182036_104131791	3300016270	Soil	MPRYYFHLTNGNEVLTNHTGVDLPGNAAARTDAVA
Ga0182041_103818781	3300016294	Soil	MPRYYFHLSDGKQVLNNHKGIDLSGNAAAREDALALARHLKHGAVMPGWDWS
Ga0182032_103322183	3300016357	Soil	MPRYYFHLTNGNEVLTNHTGVDLPGNAAARTDAVALARD
Ga0182040_104284242	3300016387	Soil	MPRYYFRLINGKQVLNNHKGIDLPGNAVARTDAVALARDLKHGKVMPNWDWRGWFV
Ga0182039_116312952	3300016422	Soil	MPRYYFHLSNGTQVLDNHKGLDLPGDAAAREDAVVLARDLKHGAAMPG
Ga0187786_103308612	3300017944	Tropical Peatland	MPRYYFRLTDGAQVLDNHQGVDLAGDAAAREDAVALARDLKQGVAMPRWDWGGWFV
Ga0187785_105683842	3300017947	Tropical Peatland	MPRYYFNLTDGKQTLSNHKGIDLPGHAAARADAVEFARGLKRGTAMPGW
Ga0184610_11838711	3300017997	Groundwater Sediment	MPRYYFHLTDGKETVKNPEGMDLSGAAAAREEAMVLARDLKHGKVMPGR
Ga0184635_101584572	3300018072	Groundwater Sediment	MPRYYFHLTDGKQVLNNHKGIYLSGNAAAREEALAMERDL
Ga0184609_103490032	3300018076	Groundwater Sediment	MPRYYFHLTDGKETVKNPEGMDLSGTAAAREEAMVLARDLKHGKVMPGRSWNGW
Ga0193705_10151474	3300019869	Soil	MPRYYFHLTDGKQVLNNHKGIDLPGNAAVREDAVALARDLK
Ga0210406_104905043	3300021168	Soil	MPRYFFHLTDGKQVLSNHKGIDLPGDAAARDDAVVLARDLKHGAVMPGWDWTG
Ga0193699_100103453	3300021363	Soil	MPRYYFHLTDGKETVKNPEGMDLSGAAAAREEAMVLARDLKHGKVMPGRSWNGWLV
Ga0210385_109157871	3300021402	Soil	MPRYYFHLTNGRDVLSNHKGVDLPGHAAARTDAVALARDLKGGVAMPGWEWT
Ga0126371_101571694	3300021560	Tropical Forest Soil	MPRYYFHLSDGKKVLGNHKGIDLSGNAAAREDALVLARDLKHGAVMPGWDWSGWFVM
Ga0207656_100179874	3300025321	Corn Rhizosphere	MPRYFFHLSDGRQVLNNHKGIDLSGNAAARENALVLGRDLKHGAVMPGWDWG
Ga0207671_101305964	3300025914	Corn Rhizosphere	MPRYFFHLSDGKQVLNNHKGIDLSGNAAARENALVLARD
Ga0207644_117272592	3300025931	Switchgrass Rhizosphere	MPRYYFRLTDGNQILNNHKGVDLAGDAAALEDALALARDLKHGPVMQGWDWAGWFVKIV
Ga0207669_108570511	3300025937	Miscanthus Rhizosphere	MPRYFFHLSDGRQVLNNHKGIDLSGNAAARENALVLARDLKHGAVMPGWD
Ga0207712_112182591	3300025961	Switchgrass Rhizosphere	MPRYYFHLTDGKETVNNPQGMDLPGTAAAREEAMVLARDLKHGKVMPG
Ga0207708_114271812	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MPRYFFHLSDGKQVLNNHKGIDLSGNAAARENALVLARDLK
Ga0209881_11827951	3300026273	Soil	MPRYYFHLTDGKQVLNNHKGIDLSGNAAARADAVALARDLKHGAAMPGWN
Ga0207859_10231291	3300026859	Tropical Forest Soil	MPRYYFHLGDGKQVLNNHKGIDLSGNAAAREDALVLARDLKHGAVMPGWDWSGWFVTIVD
Ga0207805_10194621	3300026887	Tropical Forest Soil	MPRYFFHLTDGKHVLNNHKGIDLAGNAAARDDAVTLARDLKHGAIMRGWNWTGWFVTIL
Ga0207781_10068483	3300026890	Tropical Forest Soil	MPRYFFHLTDGKHVLNNHKGIDLAGNAAARDDAVTLARDLKHGAIMRGWNWTGW
Ga0207758_10002918	3300026895	Tropical Forest Soil	MPRYYFHLGDGKQVLNNHKGIDLSGNAAAREDALVLARDLKHGAVMPGWDWSGWFVTI
Ga0209799_11605341	3300027654	Tropical Forest Soil	MPRYYFRLTDGEQVLDNHQGLDLAGEAAAREDALALARDLKRGDVMPGWEWDGWFINIV
Ga0207862_11865761	3300027703	Tropical Forest Soil	MPRYYFHLTNGEQVLDNHKGLDLPGDAAAREDAVVLARDLKHGAAMPGWDWAGWLVVINNEQG
Ga0209067_106783372	3300027898	Watersheds	MPRSYFHLTDGKQAQNNRKGVDLPSDAAARADAGTLAYDL
Ga0209069_106021961	3300027915	Watersheds	MPRYYFHLTDGKKVLNNHKGIDLSGNAAAREDALALARDLKHGAIMRGWNWTGWFV
Ga0307293_100320351	3300028711	Soil	MPRYYFHLTDGKETVKNPEGMDLSGTAAAREEAMVLARDLKHGKVMP
Ga0307313_100065901	3300028715	Soil	MPRYYFHLTDGKETVKNPEGMDLSGTAAAREEAMVLARDLKHGKVMPG
Ga0307296_101674793	3300028819	Soil	MPRYYFHLTDGKETVKNPEGMDLSGTAAAREEAMVLARDLKHGKVMPGRSWNGWLVT
Ga0311363_105178092	3300029922	Fen	MPRYFFHLTDGKQVLNNHKGIDLAGNAAAIANAVVLAGDLKAGAVMPGFDWTG
Ga0308185_10581852	3300031081	Soil	MPRYYFHLTDGKQVLDNHKGIDLSGNAAAREDALAPARDLKHGAVMPGWNWTGWFVVIVD
Ga0307498_100076772	3300031170	Soil	MPRYYFHLTDGKQVLNNHKGIDLSGNAAAREDALALARDLKHGAVMPGWNWTG
Ga0170820_145803822	3300031446	Forest Soil	MPRYYFHLTDGKQVLNNHKGIDLPGNAAARENAVALAPDLE
Ga0170818_1022015571	3300031474	Forest Soil	MPRYYFHLTDGKQVLNNHKGVDLSGNAAAREDALALARDLKHGAVMP
Ga0318538_106438611	3300031546	Soil	MPRYYFHLSNGTQVLDNHKGLDLPGDAAAREDAVVLARDLKHGAAMPGWDWAGWL
Ga0306918_112165602	3300031744	Soil	MPRYYFRLINGKQVLNNHKGIDLPGNAVARTDAVALARDLKHGKVMPNWDWR
Ga0318492_104190442	3300031748	Soil	MPRYYFHLSNGTQVLDNHKGLDLPGDAAAREDAVVLARDLKHGAAMPGWDWAGWLV
Ga0318512_107525671	3300031846	Soil	MPRYYFHLTNGKQVLDNHKGINLPGDAATRNDAVELARDLK
Ga0306925_108476953	3300031890	Soil	MPRYYFHLSDGKQVLNNHKGIDLSGNAAAREDALALARDLKHGAVMPGWDWSGWFVTI
Ga0318536_101979381	3300031893	Soil	MPRYYFHLSDGKKVLSNHKGIDLSGNAAAREDALVLARDLKHGAVMPGWDW
Ga0306923_105827553	3300031910	Soil	MPRYYFHLSDGKQVLNNHKGIDLPGNAAAREDALALA
Ga0306921_111481043	3300031912	Soil	MPRYYFHLSDGKKVLSNHKGIDLSGNAAAREDALVLARDLKHGAVMPGWDWTG
Ga0306921_117791261	3300031912	Soil	MVFFAADRFAMPRYYFHLSDGKQVLNNHKGIDLAGNAAAREDALALARDLKHGAVMPGW
Ga0306921_121471181	3300031912	Soil	MPRYYFRLINGKQVLNNHKGIDLPGNAVARTDAVALARDLKHGKVMPNWDWRGWFVAIV
Ga0310916_111947281	3300031942	Soil	MPRYHFHLTDGKQVLKNHKGIDLPGNAAARDDALVLARDLKHGPV
Ga0310909_108068891	3300031947	Soil	MPRYYFHLSNGTQVLDNHKGLDLPGDAAAREDAVVLARDLKHGAAMPGWDWAGWLVVINNEQ
Ga0310909_114322041	3300031947	Soil	MPRYYFHLTNGKEVLNNHKGMDLPGHAAARTDAVALARDLKHGAAMP
Ga0310909_115808951	3300031947	Soil	MPRYYFRLINGKQVLNNHKGIDLPGNAVARTDAVALARDLKHGK
Ga0307479_118926291	3300031962	Hardwood Forest Soil	MPRYYFHLTDGKNVLSNHQGIDLAGDAAARADALALADDLRRG
Ga0318531_100281751	3300031981	Soil	MPRYYFHLSDGKKVLSNHKGIDLSGNAAAREDALVLARDLKHGAVMPGWDWSGW
Ga0310890_111394581	3300032075	Soil	MPRYYFHLTDGNQVLNNHKGIDLSGDAAARDDAMTLARDLKHGAVMRGW
Ga0306924_100411721	3300032076	Soil	MPRYYFHLSDGKQVLNNHKGIDLSGNAAAREDALALARDLKHGAVMPGWDWSGWF
Ga0306924_108825882	3300032076	Soil	MPRYYFHLTNGKEVLSNHKGIDLPGHAAARTDALALARDLKHGAAMPGWDWTGWFVMIV
Ga0306924_119051532	3300032076	Soil	MPRYYFHLTNGKEVLNNHKGIDLPGHAAARTDALALARDLKHGAARQHK
Ga0318577_106086461	3300032091	Soil	MPRYYFHLSNGTQVLDNHKGLDLPGDAAAREDAVVLARDLKHGAAMPGWDWAGWLVV
Ga0306920_1018142322	3300032261	Soil	MPRYYFHLTNGNEVLNNHKGIDLPGHAAARTDALALARDLKHGAAMPGWDWTGWF
Ga0335085_121703261	3300032770	Soil	MPRYYFHLTDGKQVLNNHKGIDLSGNAAARDDALALARDLKHGAVMPGW
Ga0335078_121900692	3300032805	Soil	MARFYFHLTDGKQVLSNHKGLDLAGDAAARDNAVAL
Ga0335080_115388611	3300032828	Soil	MPRYFFHLTDGKQVLNNHKGLDLAGNAAARDDALVLARDLKHGALMAGWN
Ga0335070_114708871	3300032829	Soil	MPRYYFHLTDGLHVLNNHKGIDVPGNAAARDDALALARDFKHGAIMP
Ga0335081_106360873	3300032892	Soil	MPRYYFRLTDGAQVLDNHQGVDLAGDAAAREDAVALARDLKQGAAMPGWDWGGWFVRIV
Ga0335081_118539362	3300032892	Soil	VLRYYFHLTNGQRVLNNHKGIDLSGKATAREGALPLARDLKHGSAMPGWELGRLVGENR
Ga0335071_120247721	3300032897	Soil	MPRYYFHLTDGAQLLNNHKGVDLAGDAAAREDATVLARHLKHADAMRGWD
Ga0310914_100840616	3300033289	Soil	MPRYHFHLTDGKQVLKNHKGIDLPGNAAARDDALVLARDLKHGPVMQGWD
Ga0316628_1014532591	3300033513	Soil	MPRYYFHLTDGNQVLNNHKGIDLSGNAAARADAVALARDLKHGAV
Ga0326723_0045121_1_162	3300034090	Peat Soil	MPRYYFHLTDGNQVLNNHKGIDLSGNAAARADAVAFARDLKNGAVMPGWNWTGW