Scaffold Ga0335020_0012111

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0012111
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5144
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002162	Metagenome / Metatranscriptome	588	Y
F007469	Metagenome / Metatranscriptome	350	Y
F020681	Metagenome / Metatranscriptome	222	Y
F032636	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0012111_1179_1346	F002162	N/A	MPNYEFMCVNEGTTIIVDLPMDHKIPHCQLCGKQLRRVYCAVPAIFKGTGWAGKK
Ga0335020_0012111_1346_1504	F007469	N/A	MIDGSGLTATFTDNGVKVEPSTIYCDTCNDDRLLHEGDLLRCYSCHSINRIP
Ga0335020_0012111_2750_2860	F032636	N/A	MMAVLHTIEGLMGLETDYRDRSIDDHIDEFENIGVI
Ga0335020_0012111_946_1197	F020681	GGA	MGWQKMKFRCNFCSANSEFIWMDGYATANGFRVYQCLKCCAIGTKNLAEATDTQEPVKRCDQCGSWQFVDIPCHTCQLVREKQ