Scaffold Ga0335020_0000786

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0000786
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23397
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (76.79%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F030758	Metagenome / Metatranscriptome	184	Y
F043932	Metagenome / Metatranscriptome	155	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000786_19888_20262	F043932	AGGA	MAKKFKSLLNLLTLPEDPIIGSTGDVYFNVTSKNIKIYNGAVWVDLTPGSTDPAPFYMHTHSYDGNVHTVNLQETIDFSDINNNAGVVETSPAIIGIDGGTPTSSYTNASYTQLTLLDGGQIGD
Ga0335020_0000786_2_232	F000263	GAGG	MNQEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLKDALAQEELSEEAMDSMVRTECEGRLDTLVELYQLT
Ga0335020_0000786_22389_22754	F030758	GGA	MATENKNFKVKNGLNVAGTATFGSNVVLGETPLRFDTATNKLQIQLNGTWTPIAFNSDIPDPASQISFMDIGLAIDYNGEPIYTVQANGVTPEVTSKFVDGGSPSSTDADVSMVFDSGVI
Ga0335020_0000786_9316_9447	F085708	N/A	MGRVMNRLLTTLVQLGIGIPALIMLRLVWREIVADYREWANSH