NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0000786

Scaffold Ga0335020_0000786


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0000786 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23397
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (76.79%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F030758Metagenome / Metatranscriptome184Y
F043932Metagenome / Metatranscriptome155Y
F085708Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0000786_19888_20262F043932AGGAMAKKFKSLLNLLTLPEDPIIGSTGDVYFNVTSKNIKIYNGAVWVDLTPGSTDPAPFYMHTHSYDGNVHTVNLQETIDFSDINNNAGVVETSPAIIGIDGGTPTSSYTNASYTQLTLLDGGQIGD
Ga0335020_0000786_2_232F000263GAGGMNQEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLKDALAQEELSEEAMDSMVRTECEGRLDTLVELYQLT
Ga0335020_0000786_22389_22754F030758GGAMATENKNFKVKNGLNVAGTATFGSNVVLGETPLRFDTATNKLQIQLNGTWTPIAFNSDIPDPASQISFMDIGLAIDYNGEPIYTVQANGVTPEVTSKFVDGGSPSSTDADVSMVFDSGVI
Ga0335020_0000786_9316_9447F085708N/AMGRVMNRLLTTLVQLGIGIPALIMLRLVWREIVADYREWANSH

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