Basic Information | |
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Taxon OID | 3300034082 Open in IMG/M |
Scaffold ID | Ga0335020_0000786 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 23397 |
Total Scaffold Genes | 56 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (76.79%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000263 | Metagenome / Metatranscriptome | 1424 | Y |
F030758 | Metagenome / Metatranscriptome | 184 | Y |
F043932 | Metagenome / Metatranscriptome | 155 | Y |
F085708 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335020_0000786_19888_20262 | F043932 | AGGA | MAKKFKSLLNLLTLPEDPIIGSTGDVYFNVTSKNIKIYNGAVWVDLTPGSTDPAPFYMHTHSYDGNVHTVNLQETIDFSDINNNAGVVETSPAIIGIDGGTPTSSYTNASYTQLTLLDGGQIGD |
Ga0335020_0000786_2_232 | F000263 | GAGG | MNQEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLKDALAQEELSEEAMDSMVRTECEGRLDTLVELYQLT |
Ga0335020_0000786_22389_22754 | F030758 | GGA | MATENKNFKVKNGLNVAGTATFGSNVVLGETPLRFDTATNKLQIQLNGTWTPIAFNSDIPDPASQISFMDIGLAIDYNGEPIYTVQANGVTPEVTSKFVDGGSPSSTDADVSMVFDSGVI |
Ga0335020_0000786_9316_9447 | F085708 | N/A | MGRVMNRLLTTLVQLGIGIPALIMLRLVWREIVADYREWANSH |
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