Scaffold Ga0335020_0000056

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0000056
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 91892
• Total Scaffold Genes: 182
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (51.10%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008402	Metagenome / Metatranscriptome	334	Y
F024768	Metagenome / Metatranscriptome	204	Y
F029435	Metagenome / Metatranscriptome	188	Y
F032252	Metagenome / Metatranscriptome	180	Y
F037722	Metagenome / Metatranscriptome	167	Y
F056403	Metagenome / Metatranscriptome	137	Y
F074802	Metagenome / Metatranscriptome	119	N
F076129	Metagenome / Metatranscriptome	118	Y
F083877	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000056_10076_10306	F076129	GAG	MKNPNPECPREDCAFSHSGGSSTLASYIPVYDKNGVNTNPDANITTFKVNCLSCGKMWVGKSRLDVTTYEEVRGDT
Ga0335020_0000056_11984_12169	F029435	N/A	MAKQELKELLTPEFLSTLHTAVECCGWDVDMIESMEFCNWCYSKAEVLGPYYDMSFEMEE
Ga0335020_0000056_12393_12560	F037722	GAGG	MTKMTEKSAEKIGETIGFYVVIGLVGWALVSFFPLTWAQALVISWMYNTFIDALK
Ga0335020_0000056_15671_15892	F008402	N/A	MTIEITNQVRIQQHQDFWYNVEDTHLDGGCDGCTISYWEEDTERGDKRIQHICMGKEEALAIADAIYKLFKEN
Ga0335020_0000056_16276_16452	F056403	GAG	MRQLEINSRWKHKTSNDAYIVVKQYSHRVVLKHELTGETIKLTIGHFNPEGFDEYQAL
Ga0335020_0000056_17487_17708	F074802	GGAGG	MNSTCTCSHIKIGTTVSDNKNLNPECPEHGYNSAWYNSPEQVKKRGERSQRLRELYDARRKAQEKLNETHRNN
Ga0335020_0000056_18748_18930	F032252	GAGG	MKLYRYKKDGCLYTLYQNILRFPYYTLIAIPYFPNQGILAKSNWMKKRISMKDFEVVAER
Ga0335020_0000056_19396_19581	F083877	AGGA	MTNFWVIMQKRRDGKVYTDLHKTNEIMYLSYEDAVEHFNNSEHYKEYYHIVKLLATLDEE
Ga0335020_0000056_20870_21124	F024768	AGGA	METKIENGHKFIVGHIFKGEEIQVGSRWIGASGGIVTVEGLNSYGSTDPWYEVVYSWYENEEKKTHDKDVFAFQCHYCLIVEDT
Ga0335020_0000056_25395_25658	F024768	N/A	METEIINGHKAIVRHIFKAEELKVGSRWIGAGGGKTVVTIEGLNQYGSIDPWTEVVYSWYENGEKKTNDKDHFSFQCKYCMICEELK