NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0093205

Scaffold Ga0310130_0093205


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0093205 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)903
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045612Metagenome152Y
F086661Metagenome110Y
F088510Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0093205_236_556F086661N/AMKTYTYENGQLISVTDNRALDEAKAENIDQFRSLVSELFIRAKLNEATQQNAALGIYPPERCEAIKSYIAACRNEYLRCKELILAAQTNEEADAVQFVAPAVPEGM
Ga0310130_0093205_560_700F045612GGAGGMAAAYTYSDFIAALKYLEAEGYIERFYDSSGSECVRICEGAEECEV
Ga0310130_0093205_697_903F088510AGGAGMSAEDHAMLFDIRERIARIEARQVHILEVMTDNKTKMDRIEQEAHGLKGRVWLVSTIVFGVLAAAWEIV

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