Scaffold Ga0310130_0074825

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310130_0074825

Scaffold Ga0310130_0074825

Overview

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0074825 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1008
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)		Depth (m)	2896
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040073	Metagenome	162	Y
F091912	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0074825_621_839	F040073	N/A	MLKFEMSPEDMFWQEKMIRSINDCSSMSELKEMATLLTKIATQRQIAIKGLVADAMELMKDSYSHKLPAIKD
Ga0310130_0074825_840_1007	F091912	N/A	SDYINIHAKQDAQKLGGAYGIKEGVEIQPVSRITDAVDVKALPARDPLTGEDDSL

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