Scaffold Ga0310130_0021595

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0021595
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2049
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009600	Metagenome	315	Y
F011218	Metagenome / Metatranscriptome	293	N
F015723	Metagenome / Metatranscriptome	252	Y
F039112	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0021595_1126_1566	F015723	N/A	MAKIVSITPTGQWQDLFKLEIRFDNGDFGTAFAKSQTPSYAVGDEVEYTKNEKGTIKIQRPNNFGGGGGSFGGSFANTSKVSGDDRSASIIRQVALKAAVEYASAAGHDVNTILANAETFNKWMSGQSAAPASHTEHFATRNESPF
Ga0310130_0021595_379_579	F011218	GGAG	MQYYTNPAKRRKIDFLLAECASLFANCDSTYAARQQAKYKEQELLAQIAKLDYHFAIQCGYLQQES
Ga0310130_0021595_552_938	F009600	N/A	MRVPATGELKSYHVVVGKVPSLNAFYASKHWTVRAKAKDKHCAEVLEQLQEYDCIPIQHVYITCKVNYRYDIDNSIMAVKFALDAFRKWGGVKDDSRAYVRKLKLEHDPDIHPDTAEITFQGLVVSQT
Ga0310130_0021595_973_1113	F039112	N/A	MTLSLSQETYTQTVIAQQAQIQALQSKIEELQARIEVLEQQSILFI