Scaffold Ga0310130_0016827

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0016827
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2390
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005175	Metagenome / Metatranscriptome	409	Y
F098928	Metagenome / Metatranscriptome	103	N
F105047	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0016827_2_250	F098928	AGG	MIEKIKQVNDLCAAHGTYINQHGKKTVSAWSKIKYFREVFGTEFGINCRIVEHSDRYVIMKCEILGYDPERIVASGYSKQFRD
Ga0310130_0016827_2006_2269	F105047	GAGG	MRHINYDKVIVEWLDIQSCDNAWSSLDEFDKLIPAKCTTIGYLYDENKDWVKTFATYSINENSDDFDVGDAVVIPRGCIVSIKKIEN
Ga0310130_0016827_2270_2389	F005175	N/A	MIDQELTVEIVCEMYEEKILVLKKEIDRLNEEVQALNLEL