NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0016827

Scaffold Ga0310130_0016827


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0016827 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2390
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005175Metagenome / Metatranscriptome409Y
F098928Metagenome / Metatranscriptome103N
F105047Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0016827_2_250F098928AGGMIEKIKQVNDLCAAHGTYINQHGKKTVSAWSKIKYFREVFGTEFGINCRIVEHSDRYVIMKCEILGYDPERIVASGYSKQFRD
Ga0310130_0016827_2006_2269F105047GAGGMRHINYDKVIVEWLDIQSCDNAWSSLDEFDKLIPAKCTTIGYLYDENKDWVKTFATYSINENSDDFDVGDAVVIPRGCIVSIKKIEN
Ga0310130_0016827_2270_2389F005175N/AMIDQELTVEIVCEMYEEKILVLKKEIDRLNEEVQALNLEL

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