Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0004304 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0004304 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5829
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5829

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (84.62%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F019319	Metagenome	230	N
F025023	Metagenome / Metatranscriptome	203	N
F040082	Metagenome	162	N
F058107	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0004304_1652_1876	F040082	AGGAG	MTADTFAMSQEIIELQTRVAELSVALEHMTEQRDNAVDAAESLHQELEACRDRIKSLGGQLDRLRIHLQQGTEL
Ga0310130_0004304_1873_2016	F019319	N/A	MEVKMTKKDIQDAIAFLERQFVGVGEQDRLFEVIAALKQELDRRSKK
Ga0310130_0004304_2475_2921	F025023	AGAAGG	MIDEFEGRTYDTGVDRTCVLQLQTDFDSLRPHQRAMLKKIATECNEYGHSISLDQLKSHRRYQIGRGLVDLIMSDNCDELLITSLCHSIQGVLFKTAGGAVGHLDAACAEQFAVLCRAIRWDEQDIVWNTSTDSFGFPSKENEVSNVR
Ga0310130_0004304_4904_5476	F005528	AGGA	MRILTAILATLTSLTISLGIAHAASAPAHTSHAVNALQPLWQPPVADRLDPIQPIRFRHGDVSWLPSLAKQAGWPDHAIPKLTELVLRESGGCPNRRGGDMVDKNCNITGVSEWNHRSDTGLLQINGLNYDTSRNKWAAVCREMKICTQEPLLDPLTNLKAGLVLYRISGFEPWNPCNWRVCKASTTSVP
Ga0310130_0004304_5602_5829	F006986	N/A	SGSESWIPITSLDTEPAVVQTVGFLLSTTDGGKPDHVTIYQSRNEDNIDHVLHIPVKMVVGIKVLMDLEINSQDR
Ga0310130_0004304_658_846	F058107	GGA	MITIGLDTYIVCQLCDGEIRLDTRRITGCLCDPDAPTWVGIEPNGRLLAFSQSKYEICKEAQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0004304

Overview

Ecosystem & Geography

Associated Families

Sequences